DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cka and FAR8

DIOPT Version :10

Sequence 1:NP_001245936.1 Gene:Cka / 34096 FlyBaseID:FBgn0044323 Length:749 Species:Drosophila melanogaster
Sequence 2:NP_013742.1 Gene:FAR8 / 855044 SGDID:S000004631 Length:523 Species:Saccharomyces cerevisiae


Alignment Length:653 Identity:117/653 - (17%)
Similarity:233/653 - (35%) Gaps:209/653 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 NQQATTPQYTIPGILHFIQHEWSRFELERSQWDVDRAELQARIAMLLGERKCLESLKSDLTRRI- 152
            ||....|.||:||::|::|.|:::.|.:|..|:::|:|::||||.|.||.:.|:...:.:..:. 
Yeast     4 NQAHVHPHYTLPGVMHYLQTEFTKNERDRITWELERSEMKARIAELEGENRDLKHQLNQIQSKAV 68

  Fly   153 -------------KMLEYALR-QERAK--FYRLKYGTDPPQLNEFKPSNEDAGLAGEVATDSEVP 201
                         .:|:..|. ||..|  .|.||   .|..:|:.:..|...  ||....|.|  
Yeast    69 SPEGEKEEKHVPDSLLQSKLAVQENVKEIIYLLK---GPNTVNQLESLNSRE--AGSELHDLE-- 126

  Fly   202 YSSVSNTTWRQGRQMLRQYLAEIGYTDNIIDVRSNRVRSILGLNNNAEHDGSGGGLGGGLGGGTG 266
             ....||...:|           ....|.:|:.:|   ::|....|.:...|..      ...|.
Yeast   127 -KLNVNTPKEEG-----------SAKTNGMDILNN---ALLDTKPNPKQGPSES------PSPTK 170

  Fly   267 GENLSPNINGNESNKRASETEGRHTPAKKVQQSIDEIIVDTEAAVMANFEFLGATEMSDDDEISD 331
            .::|....|..|:|:..|:.   |:...||.      |:.:....||         :.|.|..|.
Yeast   171 VKSLFSTANKRENNETISKI---HSELSKVD------IISSYGDCMA---------LYDADTKSL 217

  Fly   332 DLEMVATDNDDTDVKLAKRAKSGKDMLTEDLEADVGEQL-LNDMNLMTEEVDGSLGLGELAQLTV 395
            ::..|   :.:.:.||.|:...|:|       :|:.:.. ::...|:..|....|.|..::..::
Yeast   218 EIHQV---DANLNSKLLKKISLGQD-------SDIMKFFWVSTSKLLVIEKSFHLKLFSISSASL 272

  Fly   396 NNESDGAYDANSKDGTGGSAGGAGYRKTWNAKYTLRSHFDGVRSLIFHPEEPVLITASEDHTLKL 460
            .::.|...| :.:..:........::..|                       :||.:.....:::
Yeast   273 ISDVDLLQD-SEQPFSSSDIINIDFKNKW-----------------------LLIASKNKSQIRI 313

  Fly   461 WNLQKTVQAKKSASLDVEPLYTFRAHTGPVLCLGMSSSGETCYSGGLDGNIECWQLPSPNIDPYD 525
            |.|. .::|.:...::::                                 |.:::...|.|.  
Yeast   314 WELD-NIEAPEDVPINIK---------------------------------ETYEITHDNDDD-- 342

  Fly   526 CYDPNVHSGTLEGHTDAVWGLTTMQSNIVSCSADGTVKLWSPYNKEPLLRTYTASEAEG-----V 585
              |.|..:..|    |.:.|:|  :.:::..|:       :||.       .|..:.||     :
Yeast   343 --DSNDSTNIL----DCILGIT--EKSLILLSS-------NPYQ-------LTIYDFEGKLLQKI 385

  Fly   586 PSSVD--------------FVRNEVDHIVVAYNSAHCIVYDTETGKQVVRLEAAQEMSGNTGKFI 636
            ...:|              |:..:...:::..::...:||..:..|.|::               
Yeast   386 DLKIDTILSGKPEEEGYHLFLDRKTSKLLIQLSNERLLVYSFDKKKVVLK--------------- 435

  Fly   637 NKVVSHPTLPITITAHE----------DRHIRFWDNTSGTLVHSMVAHL------EPV---TSLA 682
            .::....||||.:..::          |...|..:|...::...:||.:      |||   ::|.
Yeast   436 EQLTPSSTLPIQLDLNDSIITVSYSNGDFEFRNLENLKPSIDEFVVADINFSERKEPVVFSSNLI 500

  Fly   683 VDA 685
            ||:
Yeast   501 VDS 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CkaNP_001245936.1 Striatin 99..228 CDD:462401 36/145 (25%)
WD40 429..748 CDD:238121 41/295 (14%)
WD40 repeat 439..485 CDD:293791 5/45 (11%)
WD40 repeat 491..538 CDD:293791 6/46 (13%)
WD40 repeat 543..578 CDD:293791 5/34 (15%)
WD40 repeat 587..629 CDD:293791 6/55 (11%)
WD40 repeat 636..672 CDD:293791 7/45 (16%)
WD40 repeat 678..717 CDD:293791 4/11 (36%)
WD40 repeat 724..748 CDD:293791
FAR8NP_013742.1 Striatin 14..101 CDD:462401 24/86 (28%)
Blue background indicates that the domain is not in the aligned region.

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