DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cka and cash-1

DIOPT Version :9

Sequence 1:NP_001245936.1 Gene:Cka / 34096 FlyBaseID:FBgn0044323 Length:749 Species:Drosophila melanogaster
Sequence 2:NP_001360512.1 Gene:cash-1 / 179445 WormBaseID:WBGene00010631 Length:681 Species:Caenorhabditis elegans


Alignment Length:706 Identity:290/706 - (41%)
Similarity:425/706 - (60%) Gaps:93/706 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 QATTPQYTIPGILHFIQHEWSRFELERSQWDVDRAELQARIAMLLGERKCLESLKSDLTRRIKML 155
            :.|.||||:.||||||||||::.||:|::|:.:|||:|||||.|.||||..|:||.||.||||||
 Worm    18 ETTRPQYTMSGILHFIQHEWTKNELDRTRWEAERAEMQARIAFLQGERKGQENLKQDLVRRIKML 82

  Fly   156 EYALRQERAKFYRLKY-GTDPPQL----NEFKPSNEDAGLAGEVATDSEVPYSSVSNTTWRQGRQ 215
            |:.|:|||||.|||.: |.:||.|    ||....:|::.|..::  |:.:..:..:..::||||.
 Worm    83 EFCLKQERAKNYRLTHNGEEPPSLEESPNENSAPSENSHLTADL--DAYINDAGEAGGSFRQGRL 145

  Fly   216 MLRQYLAEIGYTDNIIDVRSNRVRSILGLNNNAEHDGSGGGLGGGLGGGTGGENLSPNING--NE 278
            :|::||.||||:::|:||||.||:::|||...|:...                  |..:||  .:
 Worm   146 LLKRYLEEIGYSEHIMDVRSFRVKNLLGLLPQADLPS------------------SERLNGRKEK 192

  Fly   279 SNKRASETEGRHTPAKKVQQSIDEIIVDTEAA-VMANFEFLG---ATEMSDDDEISDD----LEM 335
            |:...|:::..|          |:..:|.:|: ....|:||.   |.|...||:.:..    .::
 Worm   193 SDSNYSDSDDGH----------DDAALDADASKAFEEFDFLNNMDAKEKGSDDDWAGKGASFEKL 247

  Fly   336 VATDNDDTDVKLAKRA-------KSGKDMLTEDLEADVGEQLLNDMNLMTE-------------- 379
            :....||..||...|.       |:..| :.::||.||...:.:.::...:              
 Worm   248 IKQYKDDPKVKRRSRTSTEESEEKTSND-VQKNLETDVPPGIRSAIDAAAQEELPVRRQGRRSAN 311

  Fly   380 -------EVDGSLGLGELAQLTVNNE-SDGAYDANSKDGTGGSAGGAGYRKTWNAKYTLRSHFDG 436
                   |:|.:||:.:...:.:.:| .|...|.|::            :..||.|.|||||.|.
 Worm   312 FGYGNGNELDVALGMQDNDNMDIKDEFKDEDDDPNAQ------------QVKWNIKVTLRSHLDS 364

  Fly   437 VRSLIFHPEEPVLITASEDHTLKLWNL-QKTVQAKKSASLDVEPLYTFRAHTGPVLCLGMSSSGE 500
            :|::.|||.||||.|||||..:||||| ||..:...|...::||:||||.|.||||||.:|.:|:
 Worm   365 IRAMQFHPVEPVLFTASEDGLIKLWNLDQKKDEKHNSGGTELEPVYTFRGHKGPVLCLVLSPTGD 429

  Fly   501 TCYSGGLDGNIECWQLPSPNIDPYDCYDPNVHSGTLEGHTDAVWGLTTMQSN--IVSCSADGTVK 563
            ..|:||:||||.|:.:||.|.||:|.|||.|.:.||.|||||:|.:....||  :||.|:|.||:
 Worm   430 HLYTGGIDGNICCFNVPSSNGDPFDSYDPRVLTETLTGHTDAIWSVAYHSSNSRLVSASSDSTVR 494

  Fly   564 LWSPYNKEPLLRTYTASEAEGVPSSVDFVRNEVDHIVVAYNSAHCIVYDTETGKQVVRLEAAQEM 628
            ||.|.|.|||:||..|.::..:|:|||||..|..|::.||.:.:..:.|.:||..|:..:.....
 Worm   495 LWEPGNGEPLIRTIGAPKSGILPTSVDFVSTETSHLLAAYTNCYAQIIDIDTGSTVMVFDFGAVT 559

  Fly   629 SGNTGKFINKVVSHPTLPITITAHEDRHIRFWDNTSGTLVHSMVAHLEPVTSLAVDAHGLYLLSG 693
            ...|   :||:|||||:|:|:...|||.||::|||:|:::|..:||:|.|:|||:|.:|||||||
 Worm   560 GSPT---MNKIVSHPTMPLTLIGGEDRTIRYFDNTNGSIIHEAIAHVEGVSSLAIDPNGLYLLSG 621

  Fly   694 SHDCSIRLWNLDNKTCVQEITAHRKKFDESIFDVAFHATKPYIASAGADGLAKVFV 749
            |||.|||:||::.::|:|||:|||||.|.::..||||.::..|.|||||.||||:|
 Worm   622 SHDGSIRMWNMEKRSCLQEISAHRKKNDSAVTSVAFHPSRSLIGSAGADSLAKVYV 677

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CkaNP_001245936.1 Striatin 98..228 CDD:285445 69/134 (51%)
WD40 427..>748 CDD:225201 167/323 (52%)
WD40 429..748 CDD:238121 166/321 (52%)
WD40 repeat 439..485 CDD:293791 25/46 (54%)
WD40 repeat 491..538 CDD:293791 25/46 (54%)
WD40 repeat 543..578 CDD:293791 18/36 (50%)
WD40 repeat 587..629 CDD:293791 13/41 (32%)
WD40 repeat 636..672 CDD:293791 19/35 (54%)
WD40 repeat 678..717 CDD:293791 25/38 (66%)
WD40 repeat 724..748 CDD:293791 13/23 (57%)
cash-1NP_001360512.1 Striatin 25..156 CDD:369771 67/132 (51%)
WD40 357..676 CDD:238121 166/321 (52%)
WD40 repeat 367..414 CDD:293791 25/46 (54%)
WD40 repeat 420..467 CDD:293791 25/46 (54%)
WD40 repeat 472..508 CDD:293791 17/35 (49%)
WD40 repeat 518..554 CDD:293791 13/35 (37%)
WD40 repeat 567..600 CDD:293791 17/32 (53%)
WD40 repeat 606..645 CDD:293791 25/38 (66%)
WD40 repeat 652..676 CDD:293791 13/23 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158656
Domainoid 1 1.000 134 1.000 Domainoid score I3113
eggNOG 1 0.900 - - E1_KOG0642
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H82078
Inparanoid 1 1.050 503 1.000 Inparanoid score I740
Isobase 1 0.950 - 1 Normalized mean entropy S2945
OMA 1 1.010 - - QHG55995
OrthoDB 1 1.010 - - D194096at33208
OrthoFinder 1 1.000 - - FOG0001711
OrthoInspector 1 1.000 - - oto17340
orthoMCL 1 0.900 - - OOG6_101735
Panther 1 1.100 - - LDO PTHR15653
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1845
SonicParanoid 1 1.000 - - X1258
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1716.750

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