DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cka and Strn3

DIOPT Version :9

Sequence 1:NP_001245936.1 Gene:Cka / 34096 FlyBaseID:FBgn0044323 Length:749 Species:Drosophila melanogaster
Sequence 2:NP_001025068.1 Gene:Strn3 / 114520 RGDID:621827 Length:794 Species:Rattus norvegicus


Alignment Length:829 Identity:384/829 - (46%)
Similarity:496/829 - (59%) Gaps:165/829 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 GGGGSGGLSISGLNAGGQNANVGGMGNVGGDDGGNGMVGGG-----------VNNQQATTPQYTI 99
            ||||..|:::.      .....|..||:....|.||..|||           ...:.:...||||
  Rat     6 GGGGGQGMAVP------PRPQQGPGGNLSLPPGANGAPGGGGPPAAETAGPPAGPELSRPQQYTI 64

  Fly   100 PGILHFIQHEWSRFELERSQWDVDRAELQARIAMLLGERKCLESLKSDLTRRIKMLEYALRQERA 164
            |||||:|||||:|||:||:.|:|:|||||||||.|.||||..|:||.||.||||||||||:||||
  Rat    65 PGILHYIQHEWARFEMERAHWEVERAELQARIAFLQGERKGQENLKKDLVRRIKMLEYALKQERA 129

  Fly   165 KFYRLKYGTDPPQLNEFKPSNEDAGLAGEVATDSEVPYSSVSNTTWRQGRQMLRQYLAEIGYTDN 229
            |:::|||||:..|.:...|:.|     .|...|:|.|.:..|..||:||||:|||||.|:||||.
  Rat   130 KYHKLKYGTELNQGDLKMPTFE-----SEETKDAEAPPAQNSQLTWKQGRQLLRQYLQEVGYTDT 189

  Fly   230 IIDVRSNRVRSILGLNNNAEHDGSGGGLGGGLGGGTGGENLSPNINGNESNKRASE--------- 285
            |:||||.||||:|||:|:..:            |....:||...:||.||.|:..:         
  Rat   190 ILDVRSQRVRSLLGLSNSEPN------------GSIEAKNLEQILNGGESPKQKGQEIKRPSGDV 242

  Fly   286 -------------TEGRHTPAKKVQQSIDEIIV------------------DTEAAVMANFEFL- 318
                         .|..:...:.:.:..|::.:                  |||.| :..|:|| 
  Rat   243 LETFNFLENADDSDEEENDMIEGIPEGKDKLRIHKHKIGNEGLAADLTDDPDTEEA-LKEFDFLV 306

  Fly   319 ------GATEMS--------DDDEISDDLEMVATDNDDTDVKLA-------KRAKSGK------- 355
                  ||.|..        |.|::|...|:.     |.|..|.       |:.:.||       
  Rat   307 TAEDGEGAGEARSSGDGTEWDKDDLSPTAEVW-----DVDQGLMSKLKEQYKKERKGKRGAKRVN 366

  Fly   356 -----DMLTE-------DLEADVGEQLLNDMNLMTEEVDGS------------------------ 384
                 ||:|:       .:.:.:..|..:....||:. :||                        
  Rat   367 RTNLCDMITDLGDDELPHIPSGIINQSRSASTRMTDH-EGSRAEEAEPITFPSGGGKSFIMGSDD 430

  Fly   385 -----LGLGELAQLTVNNESDGAYD--ANSKDGTGGSAGGAGYRKTWNAKYTLRSHFDGVRSLIF 442
                 ||||:||.|||.|::|.:||  || ||         ..|||||.||||||||||||:|.|
  Rat   431 VLLSVLGLGDLADLTVTNDADYSYDLPAN-KD---------ALRKTWNPKYTLRSHFDGVRALAF 485

  Fly   443 HPEEPVLITASEDHTLKLWNLQKTVQAKKSASLDVEPLYTFRAHTGPVLCLGMSSSGETCYSGGL 507
            ||.||||:|||||||||||||||||.|||||||||||:||||||.||||.|.:||:||.|:|||:
  Rat   486 HPVEPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIYTFRAHIGPVLSLAISSNGEQCFSGGI 550

  Fly   508 DGNIECWQLPSPNIDPYDCYDPNVHSGTLEGHTDAVWGL--TTMQSNIVSCSADGTVKLWSPYNK 570
            |..|:.|.:||||:||||.|:.:|.:|||..||||||||  :.:::.::|||||||::||:|..|
  Rat   551 DATIQWWNMPSPNVDPYDTYESHVLAGTLVAHTDAVWGLAYSGIKNQLLSCSADGTIRLWNPQEK 615

  Fly   571 EPLLRTYTASEAEGVPSSVDFVRNEVDHIVVAYNSAHCIVYDTETGKQVVRLEAAQEMSGNTGKF 635
            .|.:.||...:..|:|:||||:..:..|:|.::|:...|:||.||.:.:|.|.:..:....:...
  Rat   616 LPCICTYNGDKEHGIPTSVDFIGCDPAHMVTSFNTGSAIIYDLETSQSLVMLSSQVDSGLQSSNH 680

  Fly   636 INKVVSHPTLPITITAHEDRHIRFWDNTSGTLVHSMVAHLEPVTSLAVDAHGLYLLSGSHDCSIR 700
            ||:||||||||:||||||||||:|:||.:|.::|||||||:.|||||||.:|:||:|||||||||
  Rat   681 INRVVSHPTLPVTITAHEDRHIKFFDNKTGKMIHSMVAHLDAVTSLAVDPNGIYLMSGSHDCSIR 745

  Fly   701 LWNLDNKTCVQEITAHRKKFDESIFDVAFHATKPYIASAGADGLAKVFV 749
            |||||:|||||||||||||.||||:|||||.:|.||||||||.||||||
  Rat   746 LWNLDSKTCVQEITAHRKKLDESIYDVAFHPSKAYIASAGADALAKVFV 794

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CkaNP_001245936.1 Striatin 98..228 CDD:285445 80/129 (62%)
WD40 427..>748 CDD:225201 210/322 (65%)
WD40 429..748 CDD:238121 208/320 (65%)
WD40 repeat 439..485 CDD:293791 39/45 (87%)
WD40 repeat 491..538 CDD:293791 26/46 (57%)
WD40 repeat 543..578 CDD:293791 17/36 (47%)
WD40 repeat 587..629 CDD:293791 14/41 (34%)
WD40 repeat 636..672 CDD:293791 26/35 (74%)
WD40 repeat 678..717 CDD:293791 33/38 (87%)
WD40 repeat 724..748 CDD:293791 18/23 (78%)
Strn3NP_001025068.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..59 14/58 (24%)
Striatin 63..188 CDD:285445 80/129 (62%)
Caveolin-binding. /evidence=ECO:0000255 70..78 5/7 (71%)
Calmodulin-binding. /evidence=ECO:0000255 164..181 10/16 (63%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..339 7/34 (21%)
WD40 <463..792 CDD:225201 214/328 (65%)
WD40 472..793 CDD:238121 208/320 (65%)
WD 1 475..514 33/38 (87%)
WD40 repeat 482..528 CDD:293791 39/45 (87%)
WD 2 528..567 23/38 (61%)
WD40 repeat 534..572 CDD:293791 22/37 (59%)
WD 3 581..620 20/38 (53%)
WD40 repeat 586..623 CDD:293791 17/36 (47%)
WD40 repeat 632..668 CDD:293791 13/35 (37%)
WD 4 676..715 24/38 (63%)
WD40 repeat 681..717 CDD:293791 26/35 (74%)
WD 5 718..757 31/38 (82%)
WD40 repeat 723..762 CDD:293791 33/38 (87%)
WD 6 764..794 23/29 (79%)
WD40 repeat 769..793 CDD:293791 18/23 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339310
Domainoid 1 1.000 167 1.000 Domainoid score I3757
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H82078
Inparanoid 1 1.050 710 1.000 Inparanoid score I618
OMA 1 1.010 - - QHG55995
OrthoDB 1 1.010 - - D194096at33208
OrthoFinder 1 1.000 - - FOG0001711
OrthoInspector 1 1.000 - - otm46219
orthoMCL 1 0.900 - - OOG6_101735
Panther 1 1.100 - - O PTHR15653
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1258
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.910

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