DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spn28Dc and Serpina3c

DIOPT Version :9

Sequence 1:NP_609172.1 Gene:Spn28Dc / 34091 FlyBaseID:FBgn0031973 Length:536 Species:Drosophila melanogaster
Sequence 2:XP_011242304.1 Gene:Serpina3c / 16625 MGIID:102848 Length:436 Species:Mus musculus


Alignment Length:549 Identity:136/549 - (24%)
Similarity:228/549 - (41%) Gaps:142/549 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 WR-----LLLAL-LLVSSVCCESELFRDDLRTPETMAYINGLMQRRHQMQQEAQQHIQAIPPAVP 60
            ||     .::|| |:::.:|            |..:.:.:|.::|.....::             
Mouse    15 WRTDKMAFIVALGLVITGIC------------PGVLCFPDGTLERDTLFHKD------------- 54

  Fly    61 LQSPGLVNGLGNQNDPALNRISGTSVKPSNLPAAYSNGYVDLATSDRIANSVLNFANILGQHLAN 125
                       .:|...|:.::..|:   |...|:|. |..||                   |.|
Mouse    55 -----------KENGTQLDSLTLASI---NTDFAFSL-YKKLA-------------------LKN 85

  Fly   126 GKTQI-YSPLSIVHSLALLLLGAKGRSYEEL--STVFDIPDT--SRLHEQFGLMLQDLQQPTREA 185
            ..|.| :|||||..:||::.|||||.:.||:  ...|::.:|  :.:|:.||.:||.|..|..:.
Mouse    86 PDTNIVFSPLSISAALAIVSLGAKGNTLEEILEGLNFNLTETPEADIHQGFGHLLQRLSHPGEQV 150

  Fly   186 -ISAGRPLTDWRASSAMRSNRRAQRPGAHEVHLANGLFTQTGYTLNPDYRRVIVEVYASDLQIQD 249
             ||.|                             :.||.:....:..:::.....:|.::....|
Mouse   151 QISTG-----------------------------SALFVEKHLQILAEFQEKARALYQAEAFTAD 186

  Fly   250 FEGSPATARYNINAYVAQHTKNHIENIIASDIPQTTRMILANALYFKAFWETDFIESATRPDNFY 314
            |: .|..|...||.||:..|:..|:.:| ||:...|.|:|.|.:|||..|:..|....|....||
Mouse   187 FQ-QPLEATKLINDYVSNQTQRKIKGLI-SDLDTDTLMVLVNYIYFKGKWKMPFNPRDTFESEFY 249

  Fly   315 PNGEGT--EPVMRVQMMATGGAYPYHEDHELGCKIIGLPYRGNLSTMYIIQPFKSSVRELMALQK 377
            .:.:.:  .|:|:::.:.|    ||..|.||.|.::.|.|:||.|.::|: |.:..::::.|..:
Mouse   250 LDVKRSVKVPMMKIKTLTT----PYFRDEELSCTVVELKYKGNASALFIL-PDQGRMQQVEASLQ 309

  Fly   378 RLTADKIESMISRMYRRAALVAFPKMHLTESVNLKTVMQRMGLGGIFSAVQNDLSLIATNEATRT 442
            ..|..|.::  |...|:...:..||..::...:||.::..:|:..|||. |.|||.|        
Mouse   310 PETLRKWKN--SLRPRKMGELYLPKFSISTDYSLKNILPELGIKEIFSK-QADLSGI-------- 363

  Fly   443 NALGGNSLQNLEAQRRAGTGGARSDLVVDDIVHKVDFTVNEQGTE-AAASSVTYLKKSGPDVLFR 506
                            .||    .||:|..:|||....|.|.||| .||:.|.:...|....|:.
Mouse   364 ----------------TGT----KDLIVSQMVHKAVLDVAETGTEGVAATGVNFRILSRRTSLWF 408

  Fly   507 GDTPFMVLVRHDPTKLVLFYGLINEPPAA 535
            ..| |::::.|...:..||...|..|..|
Mouse   409 NRT-FLMVISHTDVQTTLFIAKITHPKRA 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn28DcNP_609172.1 SERPIN 111..527 CDD:238101 115/424 (27%)
Serpina3cXP_011242304.1 serpinA3_A1AC 56..434 CDD:381019 125/468 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D491891at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X28
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.020

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