DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pes and scarb2

DIOPT Version :9

Sequence 1:NP_001137808.1 Gene:pes / 34087 FlyBaseID:FBgn0031969 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_001016557.1 Gene:scarb2 / 549311 XenbaseID:XB-GENE-948022 Length:483 Species:Xenopus tropicalis


Alignment Length:468 Identity:128/468 - (27%)
Similarity:214/468 - (45%) Gaps:45/468 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 ARLGIVLLGICCIASGIYLFRNWIDMFTRMRGQEMALSPNSRSFEGWKVSPLPLDFDIYLFNWTN 73
            |.:.:.||.:..:   :.|...::|:......|.:.|...|..||.|...|.|:....|.||.||
 Frog    10 AAVSVTLLIVSIV---LLLTHTFMDIVEGQVKQAIVLKNESEVFEDWANPPPPVYMQFYFFNVTN 71

  Fly    74 PDDFYVGSNKKPHFEQLGPYRFREKPDKVDIEWHNHNASVSFHKKSWFYFDAAGSNGS-LWDKVT 137
            |  ..|.|.:||..:::|||.:||...:.:|.:..:...||......:.|:...|.|. ..|.:.
 Frog    72 P--LEVLSGEKPFVDEIGPYTYREYRPRENITFSVNGTEVSAVTPKTYVFEPEKSIGDPKVDLIR 134

  Fly   138 TVNSVAHSAARRAAVDWFARTGVNIANKLYRQGVTITKTVDEMLFKGYEHPFISVGKLLRPQDVP 202
            |||....:...........|..:..|.|.|::|:.:|:||||:|: ||:...:|:..       |
 Frog   135 TVNIPLVTILEMTKDSSLLRPFIIAALKTYKEGMFVTRTVDELLW-GYKDAVLSILH-------P 191

  Fly   203 YKR-----IGYHYPRNGSSEFDGDINMFTGADDIAKMGQIHTWN-----NLTHTGAFEGTCGQVH 257
            :|:     .|..|..|.:.  ||:....:|..|..:..||..|.     |...|    .||..::
 Frog   192 FKKNISDTFGLFYKMNTTD--DGEYIFLSGEKDYLEFTQIAEWKGQKALNWWTT----ETCNMIN 250

  Fly   258 GSMGEFFPPNLGTKDTVYMYMPKMCRAIPLDYVETVTVHGVTAYKFSGTRHAVDNGTLYPDTRCY 322
            |:.|..|.|.|...||:||:...:||:|...|..:..:..::.::||.......|.::.|..:.:
 Frog   251 GTDGTSFHPLLNKDDTIYMFSSDLCRSIYAVYESSENIKDISVFRFSPPASVFANVSVNPQNKGF 315

  Fly   323 CV-GGKCMPSGVINIGPCSFNASVYMSFPHFYMADPSYLEAIEGLRPEREKHEFFMALEPNAGVP 386
            || .|.|:|||::|:..|...|.:.:|.||||.||.:.:.:|.|::|.:|.|..|:.|.|..|..
 Frog   316 CVPEGNCLPSGLLNVSICKEGAPIVLSSPHFYQADENVINSIRGMKPVKEHHMTFLDLNPLTGTL 380

  Fly   387 MDVGGGFQANYYMEPIPGITLYENVPTVMIPMMWCEERVRVSEEIAAD----------IALVPLI 441
            :......|.|.|:..|....:.:::.|:..|:|...|.|.:.::.|..          :|.:|.|
 Frog   381 IQAAKRIQVNVYVRKINVYLITQDIQTLFFPVMHLNESVLIDDKSAGRLRSILFQGRVVANIPFI 445

  Fly   442 VLLGQIVTGILLA 454
            ::    ..||:||
 Frog   446 IM----GLGIILA 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pesNP_001137808.1 CD36 14..463 CDD:279474 127/463 (27%)
scarb2NP_001016557.1 CD36 29..460 CDD:366481 124/446 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11923
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.110

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