DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pes and scarb1

DIOPT Version :9

Sequence 1:NP_001137808.1 Gene:pes / 34087 FlyBaseID:FBgn0031969 Length:555 Species:Drosophila melanogaster
Sequence 2:XP_017213428.1 Gene:scarb1 / 387260 ZFINID:ZDB-GENE-031126-1 Length:511 Species:Danio rerio


Alignment Length:462 Identity:124/462 - (26%)
Similarity:224/462 - (48%) Gaps:34/462 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 IVLLGICCIASGIYLFRNWI---DMFTRMRGQEMALSP-NSRSFEGWKVSPLPLDFDIYLFNWTN 73
            :||.|:..:...:.:|...|   |...:    .:.::| |..|:..||..|:|....:|.|:..|
Zfish    12 LVLGGMALLFGTVLVFVGPIIIDDQIVK----NVEINPKNDLSYTMWKDIPVPFFMSVYFFHIVN 72

  Fly    74 PDDFYVGSNKKPHFEQLGPYRFREKPDKVDIEWHNHNASVSFHKKSWFYFDAAGSNGSLWDKVTT 138
            ||:...|  ::|...|.|||.:||...|.:|.:| .|.:||:.:...::|:.:.|.|...|.||.
Zfish    73 PDEILKG--ERPMVIQRGPYVYRENRWKDNITFH-ENHTVSYKEYRQYFFEESMSVGDESDVVTI 134

  Fly   139 VNS-VAHSAARRAAVDWFARTGVNIANKLYRQGVTITKTVDEMLFKGYEHPFISVGKLLRPQDVP 202
            .|. |..::.....:.:..|..::...|.:.:|..:||.|.|::: ||:...:.......|..:|
Zfish   135 PNMLVLGASVMMENMPFPVRLLLSTTFKTFNEGPFLTKPVGELMW-GYDSKLVDFLNKYLPGMLP 198

  Fly   203 YK-RIGYHYPRNGSSEFDGDINMFTGADDIAKMGQIHTWNNLTHTGAFEG-TCGQVHGSMGEFFP 265
            .. :.|.....|.|:  .|...:|||.|||.|:..:.:||.|.:...:.. .|..::|:.|:.:|
Zfish   199 SSGKFGLFADFNNSN--TGLFTIFTGRDDIRKVHMVDSWNGLKNVDYWRSDQCNMINGTAGQMWP 261

  Fly   266 PNLGTKDTVYMYMPKMCRAIPLDYVETVTVHGVTAYKFSGTRHAVDNGTLYPDTRCYCVGGKCMP 330
            |.:..:.|:..|.|..||::.|.|...:...|:..|::...:....||..:|....:|   .|..
Zfish   262 PFMTKETTMPFYSPDACRSMELVYQRPLVSSGIPVYRYVSPKTLFANGADFPPNEGFC---PCRQ 323

  Fly   331 SGVINIGPCSFNASVYMSFPHFYMADPSYLEAIEGLRPEREKHEFFMALEPNAGVPMDVGGGFQA 395
            ||::|:..|...:..::|.||||.|||..|:.:.||.|..::|..|:.:.|..|||::|....|.
Zfish   324 SGLLNVSSCRHGSPTFISQPHFYNADPQLLDTVSGLSPSEDEHGLFIDIHPETGVPVNVSVRLQL 388

  Fly   396 NYYMEPIPGITLYENVPTVMIPMMWCEERVRVSEEI----AADIALVP--------LIVLLG--Q 446
            |.:::.:.||:...|:..|::||:|.||...:...:    ..::.::|        :.:.||  .
Zfish   389 NLFLKKVSGISETGNIAEVVMPMLWFEESGYIDGPVLHTFRTNLVVLPKVMEYMQYIFIALGLAA 453

  Fly   447 IVTGILL 453
            |:|.::|
Zfish   454 ILTAVIL 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pesNP_001137808.1 CD36 14..463 CDD:279474 124/461 (27%)
scarb1XP_017213428.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582130
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45589
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11923
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.960

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