DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spn28Da and Serpind1

DIOPT Version :10

Sequence 1:NP_001036345.1 Gene:Spn28Da / 34082 FlyBaseID:FBgn0051902 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_077358.1 Gene:Serpind1 / 79224 RGDID:619854 Length:479 Species:Rattus norvegicus


Alignment Length:387 Identity:109/387 - (28%)
Similarity:180/387 - (46%) Gaps:48/387 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 QFTKQLYRSFLQD--NKQYNIIASPLCVEIGMSMILMGADGNTANELRTALNLPE-----DKKNV 73
            :|...||| .|:|  ....||..:|:.:...|.||.:|..|.|..|:.:.|:..:     .|..|
  Rat   112 KFAFNLYR-VLKDQATSSDNIFIAPVGISTAMGMISLGLRGETHEEVHSVLHFKDFVNASSKYEV 175

  Fly    74 ATIYD---KLLTKLERGKKVAILHLANRLFVNETIGVNKRYNKLVNKHFRAEAEAIKLADRLKAA 135
            .||::   ||..:|.|......|...|.|::.:...:.:.:...:.:.:.|||:....:|....:
  Rat   176 TTIHNLFRKLTHRLFRRNFGYTLQSVNDLYIQKQFPIREDFKAAMREFYFAEAQEADFSDPAFIS 240

  Fly   136 WAINDWVLDQTLDNVKDIIIPSDLTPDESAVMINAAFFKGYWKTRFDKMNTKPKVFYVSKSYQVN 200
            .| |..:|..|...:|:.:..:|..  ...:::|..:|||.|..:|....|....|.:::...|.
  Rat   241 KA-NSHILKLTKGLIKEALENTDSA--TQMMILNCIYFKGAWMNKFPVEMTHNHNFRLNEREVVK 302

  Fly   201 VNMMSQVGRFKMRTSTIDQ-----IIELPFAYSNLSMVIVLPKDNGSLTQAEATIESYPQIV--- 257
            |:||...|.|   .:..||     |::|.:. ..:||:||:|:....:...||.:.  ||:|   
  Rat   303 VSMMQTKGNF---LAANDQELDCDILQLEYV-GGISMLIVIPRKLSGMKTLEAQLT--PQVVERW 361

  Fly   258 ---LTEMDVHVQLPKFKIDFRMELVETLKSMGIQDLFNSSSDISVLLNQSGTRISQVV-----HK 314
               :|.....|.|||||::....|||.||||||..|||.:.      |.||....:::     |:
  Rat   362 QKSMTNRTREVLLPKFKLEKNYNLVEVLKSMGITKLFNKNG------NMSGISDQRIIIDLFKHQ 420

  Fly   315 AFIEIDEEGGSAGSASASPIRGLSDYATSVVTFTVNSPFVFMIRDDDN--IYFRGRVVDPLK 374
            :.|.::|||..|.:.:......||    :.|.|||:.||:|::.:...  :.|.|||.:|.|
  Rat   421 STITVNEEGTQAAAVTTVGFMPLS----TQVRFTVDRPFLFLVYEHRTSCLLFMGRVANPAK 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn28DaNP_001036345.1 serpin42Dd-like_insects 12..372 CDD:381070 107/383 (28%)
Serpind1NP_077358.1 serpinD1_HCF2 33..479 CDD:381004 109/387 (28%)
2 X 11 AA approximate repeats, Asp/Glu-rich (acidic) (hirudin-like) 55..79
Glycosaminoglycan-binding site. /evidence=ECO:0000250 172..192 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.