DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn28Da and HMSD

DIOPT Version :9

Sequence 1:NP_001036345.1 Gene:Spn28Da / 34082 FlyBaseID:FBgn0051902 Length:384 Species:Drosophila melanogaster
Sequence 2:XP_016881199.1 Gene:HMSD / 284293 HGNCID:23037 Length:217 Species:Homo sapiens


Alignment Length:112 Identity:27/112 - (24%)
Similarity:51/112 - (45%) Gaps:4/112 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 LCVEIGMSMILMGADGNTANELRTAL---NLPEDKKNVATIYDKLLTKLERGKKVAILHLANRLF 100
            :.:...::|:.|||.||||.::..||   .:..:..::...:..||..:.|.....:|..||.||
Human     1 MSISSALAMVFMGAKGNTAAQMSQALCFSKIGGEDGDIHRGFQSLLVAINRTDTEYVLRTANGLF 65

  Fly   101 VNETIGVNKRYNKLVNKHFRAEAEAIKLA-DRLKAAWAINDWVLDQT 146
            ..::......:.....|.::|..:.:... |..|:...:|.||.|:|
Human    66 GEKSYDFLTGFTDSCGKFYQATIKQLDFVNDTEKSTTRVNSWVADKT 112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn28DaNP_001036345.1 SERPIN 16..369 CDD:238101 27/112 (24%)
HMSDXP_016881199.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D556621at33208
OrthoFinder 1 1.000 - - FOG0000050
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.920

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