DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn28Da and srp-2

DIOPT Version :9

Sequence 1:NP_001036345.1 Gene:Spn28Da / 34082 FlyBaseID:FBgn0051902 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_503318.1 Gene:srp-2 / 178586 WormBaseID:WBGene00005643 Length:359 Species:Caenorhabditis elegans


Alignment Length:346 Identity:99/346 - (28%)
Similarity:188/346 - (54%) Gaps:24/346 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 NIIASPLCVEIGMSMILMGADGNTANELRTALNLPEDKKNVATIYDKLLTKLE------RGKKVA 91
            :::.|||.:.:|:::|..||.|:|..||       ||....:.|:::....:|      .|.:..
 Worm    24 SVVLSPLSISLGLALIHAGACGSTQKEL-------EDVLGGSRIFEEFSGLMEAVGDTDNGVETK 81

  Fly    92 ILHLANRLFVNETIGVNKRYNKLVNKHFRAEAEAIKLADRLKAAWAINDWVLDQTLDNVKDIIIP 156
            |:   ||:|||:...:::.|.:.|.|.::|..|::..:...:||..:|.:|.:.|...:|| :||
 Worm    82 IV---NRVFVNQAYTIHQDYLETVEKLYKASGESLDFSQTEQAAKTMNTFVENHTNGKIKD-LIP 142

  Fly   157 SDLTPDESAVMINAAFFKGYWKTRFDKMNTKPKVFYVSKSYQVNVNMMSQVGRFKMRT-STIDQI 220
            :|...:..|.::||.:||..|:::|.|.:|..:.|:.|::....:..::::...:..| ..:.|:
 Worm   143 ADSANNAFAFLVNAMYFKADWQSKFAKESTTGREFFTSEAESRQIPFLTELDEHRDYTEDVLFQV 207

  Fly   221 IELPFAYSNLSMVIVLPKDNGSLTQAEATIE-SYPQIVLTEMD---VHVQLPKFKIDFRMELVET 281
            :.|.:|....::.|.|||....|..|...|. .|.|.:|.::.   |.||:|||||:..::|.||
 Worm   208 LSLKYADPKFTLAIFLPKQRFGLVDALEKINGEYIQNLLNDLKSSYVSVQIPKFKIEKELDLKET 272

  Fly   282 LKSMGIQDLFNSSSDISVLLNQSGTRISQVVHKAFIEIDEEGGSAGSASASPIRGLSDYATSVVT 346
            |:::||:::|...:|:|.:.::  ..||..:|||.||:||:|.:|.:|||..::...........
 Worm   273 LEAIGIKEIFAEGADLSGIADK--VFISSGIHKAIIEVDEDGTTAAAASAFKVQLEMMIMAEPTQ 335

  Fly   347 FTVNSPFVFMIRDDDNIYFRG 367
            |..:.||:|.:..:::..|.|
 Worm   336 FVADHPFLFAVLFENHTLFLG 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn28DaNP_001036345.1 SERPIN 16..369 CDD:238101 99/346 (29%)
srp-2NP_503318.1 serpinL_nematode 7..358 CDD:381047 99/346 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H76659
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57242
OrthoDB 1 1.010 - - D556621at33208
OrthoFinder 1 1.000 - - FOG0000050
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100128
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X28
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.930

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