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Protein Alignment SmE and LSM3
DIOPT Version :10
| Sequence 1: | NP_609162.1 |
Gene: | SmE / 34080 |
FlyBaseID: | FBgn0261790 |
Length: | 94 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_013543.3 |
Gene: | LSM3 / 851159 |
SGDID: | S000006434 |
Length: | 89 |
Species: | Saccharomyces cerevisiae |
| Alignment Length: | 92 |
Identity: | 26/92 - (28%) |
| Similarity: | 43/92 - (46%) |
Gaps: | 20/92 - (21%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 13 MVQPINLIFRYLQNRSRVQVWLYENISLR----IEGHIVGFDEYMNLVLDDAEEVYVK------T 67
|..|::|:...|..| :| |.|| :.|.:..||.:.|:||.||.|...: :
Yeast 1 METPLDLLKLNLDER------VY--IKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELS 57
Fly 68 RQRRNLGRIMLKGDNITLIQNVSPTKD 94
...|....:.::||.:|||. :|::|
Yeast 58 ESERRCEMVFIRGDTVTLIS--TPSED 82
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| SmE | NP_609162.1 |
Sm_E |
10..88 |
CDD:212465 |
24/84 (29%) |
| LSM3 | NP_013543.3 |
LSm3 |
4..78 |
CDD:212477 |
23/83 (28%) |
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