DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmE and SMD2

DIOPT Version :9

Sequence 1:NP_609162.1 Gene:SmE / 34080 FlyBaseID:FBgn0261790 Length:94 Species:Drosophila melanogaster
Sequence 2:NP_013377.1 Gene:SMD2 / 850981 SGDID:S000004265 Length:110 Species:Saccharomyces cerevisiae


Alignment Length:77 Identity:18/77 - (23%)
Similarity:43/77 - (55%) Gaps:8/77 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 PINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVKTR------QRRNLG 74
            |::||...:..|:.|.:.|..|  .:|...:..||.:.|:||::.:|::.:.:      :.|.:.
Yeast    30 PMSLINDAMVTRTPVIISLRNN--HKIIARVKAFDRHCNMVLENVKELWTEKKGKNVINRERFIS 92

  Fly    75 RIMLKGDNITLI 86
            ::.|:||::.::
Yeast    93 KLFLRGDSVIVV 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmENP_609162.1 Sm_E 10..88 CDD:212465 18/77 (23%)
SMD2NP_013377.1 Sm_D2 27..108 CDD:212467 18/77 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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