DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmE and LSM1A

DIOPT Version :10

Sequence 1:NP_609162.1 Gene:SmE / 34080 FlyBaseID:FBgn0261790 Length:94 Species:Drosophila melanogaster
Sequence 2:NP_564072.1 Gene:LSM1A / 838495 AraportID:AT1G19120 Length:128 Species:Arabidopsis thaliana


Alignment Length:60 Identity:16/60 - (26%)
Similarity:31/60 - (51%) Gaps:10/60 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 RIEGHIVGFDEYMNLVLDDAEE------VYVKTRQRRNLGRIMLKGDNITLIQNVSPTKD 94
            ::.|.:..||::.|.||::|.|      :|...    .||..:::|:|:.||..:...|:
plant    32 KLMGLLRSFDQFANAVLEEAYERVIVGDLYCDI----PLGLYIIRGENVVLIGELDVEKE 87

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmENP_609162.1 Sm_E 10..88 CDD:212465 15/52 (29%)
LSM1ANP_564072.1 LSm1 9..82 CDD:212475 15/53 (28%)

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