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Protein Alignment SmE and LSM6A
DIOPT Version :10
| Sequence 1: | NP_609162.1 |
Gene: | SmE / 34080 |
FlyBaseID: | FBgn0261790 |
Length: | 94 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_191540.1 |
Gene: | LSM6A / 825150 |
AraportID: | AT3G59810 |
Length: | 91 |
Species: | Arabidopsis thaliana |
| Alignment Length: | 91 |
Identity: | 21/91 - (23%) |
| Similarity: | 35/91 - (38%) |
Gaps: | 25/91 - (27%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 2 SFKGNPKVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVK 66
|.:|.|.|.|: |..:...|.:...|.|||:.::..|| ||.
plant 21 SIRGRPVVVKL------------------------NSGVDYRGTLTCLDGYMNIAMEQTEE-YVN 60
Fly 67 TRQRRNLGRIMLKGDNITLIQNVSPT 92
.:.:...|...::|:|:..|..|:.|
plant 61 GQLKNKYGDAFIRGNNVLYISTVNMT 86
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| SmE | NP_609162.1 |
Sm_E |
10..88 |
CDD:212465 |
15/77 (19%) |
| LSM6A | NP_191540.1 |
LSm6 |
14..81 |
CDD:212473 |
18/84 (21%) |
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