DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmE and LSM1B

DIOPT Version :10

Sequence 1:NP_609162.1 Gene:SmE / 34080 FlyBaseID:FBgn0261790 Length:94 Species:Drosophila melanogaster
Sequence 2:NP_566476.1 Gene:LSM1B / 820624 AraportID:AT3G14080 Length:128 Species:Arabidopsis thaliana


Alignment Length:56 Identity:15/56 - (26%)
Similarity:31/56 - (55%) Gaps:2/56 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 RIEGHIVGFDEYMNLVLDDAEEVYVKTRQRRN--LGRIMLKGDNITLIQNVSPTKD 94
            ::.|.:..||::.|.||:.|.|..:...|..:  ||..:::|:|:.||..:...::
plant    32 KLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGENVVLIGELDTERE 87

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmENP_609162.1 Sm_E 10..88 CDD:212465 15/48 (31%)
LSM1BNP_566476.1 LSm1 12..82 CDD:212475 15/49 (31%)

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