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Protein Alignment SmE and Lsm5
DIOPT Version :9
Sequence 1: | NP_609162.1 |
Gene: | SmE / 34080 |
FlyBaseID: | FBgn0261790 |
Length: | 94 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_079796.1 |
Gene: | Lsm5 / 66373 |
MGIID: | 1913623 |
Length: | 91 |
Species: | Mus musculus |
Alignment Length: | 83 |
Identity: | 24/83 - (28%) |
Similarity: | 45/83 - (54%) |
Gaps: | 10/83 - (12%) |
- Green bases have known domain annotations that are detailed below.
Fly 6 NPKVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVKTRQR 70
||. .:.|:.|:.:.:.:| :.:.......|.|.::|||:::|:||:|..|..:....|
Mouse 8 NPS----QLLPLELVDKCIGSR----IHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGR 64
Fly 71 R--NLGRIMLKGDNITLI 86
| .|.:|:|.|:|||::
Mouse 65 RITKLDQILLNGNNITML 82
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmE | NP_609162.1 |
Sm_E |
10..88 |
CDD:212465 |
22/79 (28%) |
Lsm5 | NP_079796.1 |
LSm5 |
11..86 |
CDD:212479 |
22/76 (29%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.810 |
|
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