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Protein Alignment SmE and snrpd2
DIOPT Version :9
Sequence 1: | NP_609162.1 |
Gene: | SmE / 34080 |
FlyBaseID: | FBgn0261790 |
Length: | 94 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001017582.1 |
Gene: | snrpd2 / 550244 |
ZFINID: | ZDB-GENE-040914-10 |
Length: | 118 |
Species: | Danio rerio |
Alignment Length: | 111 |
Identity: | 19/111 - (17%) |
Similarity: | 51/111 - (45%) |
Gaps: | 27/111 - (24%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MSFKGNPKVQKVMVQ------------PINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYM 53
||....||.:....: |::::.:.::|.::|.:....| .::.|.:..||.:.
Zfish 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNN--KKLLGRVKAFDRHC 63
Fly 54 NLVLDDAEEVYVK-------------TRQRRNLGRIMLKGDNITLI 86
|:||::.:|::.: ..:.|.:.::.|:||::.::
Zfish 64 NMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVV 109
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmE | NP_609162.1 |
Sm_E |
10..88 |
CDD:212465 |
15/102 (15%) |
snrpd2 | NP_001017582.1 |
Sm_D2 |
24..113 |
CDD:212467 |
15/88 (17%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
ZFIN |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.900 |
|
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