DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmE and lsm1

DIOPT Version :10

Sequence 1:NP_609162.1 Gene:SmE / 34080 FlyBaseID:FBgn0261790 Length:94 Species:Drosophila melanogaster
Sequence 2:NP_001011191.1 Gene:lsm1 / 496613 XenbaseID:XB-GENE-971223 Length:133 Species:Xenopus tropicalis


Alignment Length:60 Identity:13/60 - (21%)
Similarity:30/60 - (50%) Gaps:16/60 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 GHIVGFDEYMNLVLDDAEEVYVKTRQRRNLGR---------IMLKGDNITLIQNVSPTKD 94
            |::...|::.||||.       :|.:|.::|:         .:::|:|:.|:..:...|:
 Frog    30 GYLRSIDQFANLVLH-------QTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKE 82

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmENP_609162.1 Sm_E 10..88 CDD:212465 12/52 (23%)
lsm1NP_001011191.1 LSm1 4..77 CDD:212475 12/53 (23%)
PRK10788 <64..131 CDD:182731 4/19 (21%)

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