DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmE and snrpb

DIOPT Version :9

Sequence 1:NP_609162.1 Gene:SmE / 34080 FlyBaseID:FBgn0261790 Length:94 Species:Drosophila melanogaster
Sequence 2:NP_991230.1 Gene:snrpb / 402966 ZFINID:ZDB-GENE-040426-1819 Length:239 Species:Danio rerio


Alignment Length:92 Identity:24/92 - (26%)
Similarity:44/92 - (47%) Gaps:21/92 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 MVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEV-YVKTR-------- 68
            |:|.|:...|.:....|:.:           |....||::|||:|.|.:|. .:|.:        
Zfish     9 MLQHIDYRMRCILQDGRIFI-----------GTFKAFDKHMNLILCDCDEFRKIKPKNSKQPERE 62

  Fly    69 QRRNLGRIMLKGDN-ITLIQNVSPTKD 94
            ::|.||.::|:|:| :::.....|.||
Zfish    63 EKRVLGLVLLRGENLVSMTVEGPPPKD 89

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmENP_609162.1 Sm_E 10..88 CDD:212465 21/84 (25%)
snrpbNP_991230.1 Sm_B 5..83 CDD:212464 21/84 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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