DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmE and SmB

DIOPT Version :9

Sequence 1:NP_609162.1 Gene:SmE / 34080 FlyBaseID:FBgn0261790 Length:94 Species:Drosophila melanogaster
Sequence 2:NP_001188780.1 Gene:SmB / 34426 FlyBaseID:FBgn0262601 Length:199 Species:Drosophila melanogaster


Alignment Length:89 Identity:26/89 - (29%)
Similarity:41/89 - (46%) Gaps:22/89 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 MVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVKTR--------- 68
            |:|.:|...|.:...||..:           |....||::|||:|.|.|| :.|.|         
  Fly     9 MIQHLNYRVRIVLQDSRTFI-----------GTFKAFDKHMNLILGDCEE-FRKIRSKNSKVPER 61

  Fly    69 -QRRNLGRIMLKGDNITLIQNVSP 91
             ::|.||.::|:|:||..:....|
  Fly    62 EEKRVLGFVLLRGENIVSLTVEGP 85

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmENP_609162.1 Sm_E 10..88 CDD:212465 25/84 (30%)
SmBNP_001188780.1 Sm_B 5..82 CDD:212464 25/84 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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