DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmE and LSM1

DIOPT Version :10

Sequence 1:NP_609162.1 Gene:SmE / 34080 FlyBaseID:FBgn0261790 Length:94 Species:Drosophila melanogaster
Sequence 2:NP_055277.1 Gene:LSM1 / 27257 HGNCID:20472 Length:133 Species:Homo sapiens


Alignment Length:70 Identity:16/70 - (22%)
Similarity:34/70 - (48%) Gaps:20/70 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 ISLRIEGHIVGF----DEYMNLVLDDAEEVYVKTRQRRNLGR---------IMLKGDNITLIQNV 89
            :.||....::||    |::.||||.       :|.:|.::|:         .:::|:|:.|:..:
Human    20 VLLRDGRTLIGFLRSIDQFANLVLH-------QTVERIHVGKKYGDIPRGIFVVRGENVVLLGEI 77

  Fly    90 SPTKD 94
            ...|:
Human    78 DLEKE 82

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmENP_609162.1 Sm_E 10..88 CDD:212465 15/62 (24%)
LSM1NP_055277.1 LSm1 4..77 CDD:212475 15/63 (24%)
PRK10788 <64..131 CDD:182731 4/19 (21%)

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