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Protein Alignment SmE and snr-5
DIOPT Version :10
| Sequence 1: | NP_609162.1 |
Gene: | SmE / 34080 |
FlyBaseID: | FBgn0261790 |
Length: | 94 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_498708.1 |
Gene: | snr-5 / 176103 |
WormBaseID: | WBGene00004918 |
Length: | 85 |
Species: | Caenorhabditis elegans |
| Alignment Length: | 83 |
Identity: | 24/83 - (28%) |
| Similarity: | 41/83 - (49%) |
Gaps: | 16/83 - (19%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 14 VQPIN-------LIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVKTRQRR 71
|||:| |..:::..:.: | .:..:|.:|..|.||||.|..||| |:....:.
Worm 4 VQPVNPKPFLNSLTGKFVVCKLK---W-----GMEYKGVLVAVDSYMNLQLAHAEE-YIDGNSQG 59
Fly 72 NLGRIMLKGDNITLIQNV 89
|||.|:::.:|:..:..|
Worm 60 NLGEILIRCNNVLYVGGV 77
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| SmE | NP_609162.1 |
Sm_E |
10..88 |
CDD:212465 |
23/80 (29%) |
| snr-5 | NP_498708.1 |
Sm_F |
8..76 |
CDD:212469 |
20/76 (26%) |
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