DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rack1 and VIP3

DIOPT Version :10

Sequence 1:NP_477269.1 Gene:Rack1 / 34070 FlyBaseID:FBgn0020618 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_194712.1 Gene:VIP3 / 829105 AraportID:AT4G29830 Length:321 Species:Arabidopsis thaliana


Alignment Length:269 Identity:73/269 - (27%)
Similarity:117/269 - (43%) Gaps:48/269 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ETLQLRGTLIGHNGWVTQIATNPKDPDTIISASR--DKTLIVWKLTRDEDTN-----YGYPQKRL 60
            :.|.|..|..||:..|..:|.:|..   ||:||.  |..:.|:    |.|||     ...|...:
plant    48 DELDLVRTNTGHSLGVAALAAHPSG---IIAASSSIDSFVRVF----DVDTNATIAVLEAPPSEV 105

  Fly    61 YGHSHFISDVVLSSDGNYALSGSWDQTLRLWDLA------------------AGKTTRRFEGHTK 107
            :|........:|      |::|....:::|||.|                  :.||:.:     |
plant   106 WGMQFEPKGTIL------AVAGGSSASVKLWDTASWRLISTLSIPRPDAPKPSDKTSSK-----K 159

  Fly   108 DVLSVAFSADNRQIVSGSRDKTIKLWNTLAECKFTIQEDGHTDWVSCVRFSPNHSNP-IIVSCGW 171
            .|||||:|.:.:::..||.|.||.::: :...|...|.:||...|..:.|||  .:| ::.|...
plant   160 FVLSVAWSPNGKRLACGSMDGTICVFD-VDRSKLLHQLEGHNMPVRSLVFSP--VDPRVLFSGSD 221

  Fly   172 DRTVKVWNLANCKLKNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTL-EHND 235
            |..|.:.:.....|..:..||..::.:|..||||....:|..|....||||.....:.|: .|||
plant   222 DGHVNMHDAEGKTLLGSMSGHTSWVLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHND 286

  Fly   236 IINALCFSP 244
            .:.::.|.|
plant   287 QVWSVAFRP 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rack1NP_477269.1 WD40 7..312 CDD:238121 72/265 (27%)
WD40 repeat 18..62 CDD:293791 14/50 (28%)
WD40 repeat 68..104 CDD:293791 9/53 (17%)
WD40 repeat 109..145 CDD:293791 12/35 (34%)
WD40 repeat 153..190 CDD:293791 8/37 (22%)
WD40 repeat 196..232 CDD:293791 12/36 (33%)
WD40 repeat 237..280 CDD:293791 2/8 (25%)
WD40 repeat 287..311 CDD:293791
VIP3NP_194712.1 WD40 <12..319 CDD:441893 73/269 (27%)
WD40 repeat 17..58 CDD:293791 3/9 (33%)
WD40 repeat 64..102 CDD:293791 12/44 (27%)
WD40 repeat 105..142 CDD:293791 8/42 (19%)
WD40 repeat 162..197 CDD:293791 12/35 (34%)
WD40 repeat 203..240 CDD:293791 9/38 (24%)
WD40 repeat 246..282 CDD:293791 12/35 (34%)
WD40 repeat 288..318 CDD:293791 2/8 (25%)
Blue background indicates that the domain is not in the aligned region.

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