DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rack1 and Wsb1

DIOPT Version :9

Sequence 1:NP_001260218.1 Gene:Rack1 / 34070 FlyBaseID:FBgn0020618 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_062627.3 Gene:Wsb1 / 78889 MGIID:1926139 Length:421 Species:Mus musculus


Alignment Length:318 Identity:81/318 - (25%)
Similarity:136/318 - (42%) Gaps:69/318 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 KDPDTIISASRDKTLIVWKLTRDEDTNYG--YPQKRL------YGHSHFISDVVLSSDGNYALSG 82
            |.|:.:|....    |||.|.      :|  .|:|:.      :....|..|.:|.:.|   |:.
Mouse    98 KPPEHVIDCGD----IVWSLA------FGSSVPEKQSRCVNIEWHRFRFGQDQLLLATG---LNN 149

  Fly    83 SWDQTLRLWDLAAGKTTRRFEGHTKDVLSVAFSAD-NRQIVSGSRDKTIKLWNTLAECKFTIQED 146
            .   .:::||:..||.......|.:.|..:.|:.| :..:||.|||||:::|:        :::|
Mouse   150 G---RIKIWDVYTGKLLLNLVDHIEMVRDLTFAPDGSLLLVSASRDKTLRVWD--------LKDD 203

  Fly   147 G--------HTDWVSCVRFSPNHSNPIIVSCGWDRTVKVWNLANCKLKNNHHGHNGYLNTVTVSP 203
            |        |.:||....|||:.|  ::.|.|..:.|.:||:....:.....||:..:.....||
Mouse   204 GNMVKVLRAHQNWVYSCAFSPDCS--MLCSVGASKAVFLWNMDKYTMIRKLEGHHHDVVACDFSP 266

  Fly   204 DGSLCTSGGKDSKALLWDLNDGKNLYTLEH-------------ND-IINALCFSPNRYWLC-VAY 253
            ||:|..:...|::..:||.::|..|....|             || .:.|:.||.:...:. :|.
Mouse   267 DGALLATASYDTRVYVWDPHNGDLLMEFGHLFPSPTPIFAGGANDRWVRAVSFSHDGLHVASLAD 331

  Fly   254 GPSIKIWDLACKKTVEELRPEVVSPTSKADQPQCLSLAWSTDGQTLFAGYSDNTIRVW 311
            ...::.|      .::|..|..|:|.|..     |..|:||||..|.||..|.::..|
Mouse   332 DKMVRFW------RIDEDCPVQVAPLSNG-----LCCAFSTDGSVLAAGTHDGSVYFW 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rack1NP_001260218.1 WD40 7..312 CDD:238121 81/318 (25%)
WD40 repeat 18..62 CDD:293791 10/43 (23%)
WD40 repeat 68..104 CDD:293791 8/35 (23%)
WD40 repeat 109..145 CDD:293791 11/36 (31%)
WD40 repeat 153..190 CDD:293791 9/36 (25%)
WD40 repeat 196..232 CDD:293791 10/35 (29%)
WD40 repeat 237..280 CDD:293791 9/43 (21%)
WD40 repeat 287..311 CDD:293791 10/23 (43%)
Wsb1NP_062627.3 WD 1 124..165 9/46 (20%)
WD40 135..388 CDD:238121 71/271 (26%)
WD40 <139..382 CDD:225201 70/267 (26%)
WD 2 168..208 14/47 (30%)
WD40 repeat 174..212 CDD:293791 12/45 (27%)
WD 3 212..251 12/40 (30%)
WD40 repeat 217..253 CDD:293791 10/37 (27%)
WD 4 254..293 12/38 (32%)
WD40 repeat 261..299 CDD:293791 11/37 (30%)
WD 5 309..346 8/42 (19%)
WD40 repeat 314..353 CDD:293791 9/44 (20%)
SOCS 382..420 CDD:295349
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D805365at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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