DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rack1 and Wsb1

DIOPT Version :9

Sequence 1:NP_001260218.1 Gene:Rack1 / 34070 FlyBaseID:FBgn0020618 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_001036026.1 Gene:Wsb1 / 303336 RGDID:1307835 Length:421 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rack1NP_001260218.1 WD40 7..312 CDD:238121
WD40 repeat 18..62 CDD:293791
WD40 repeat 68..104 CDD:293791
WD40 repeat 109..145 CDD:293791
WD40 repeat 153..190 CDD:293791
WD40 repeat 196..232 CDD:293791
WD40 repeat 237..280 CDD:293791
WD40 repeat 287..311 CDD:293791
Wsb1NP_001036026.1 WD40 38..382 CDD:225201
WD40 135..388 CDD:238121
WD40 repeat 174..212 CDD:293791
WD40 repeat 217..253 CDD:293791
WD40 repeat 261..299 CDD:293791
WD40 repeat 314..353 CDD:293791
SOCS_WSB1_SWIP1 382..421 CDD:239715
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D805365at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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