DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rack1 and cpc2

DIOPT Version :9

Sequence 1:NP_001260218.1 Gene:Rack1 / 34070 FlyBaseID:FBgn0020618 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_593770.1 Gene:cpc2 / 2543298 PomBaseID:SPAC6B12.15 Length:314 Species:Schizosaccharomyces pombe


Alignment Length:314 Identity:187/314 - (59%)
Similarity:238/314 - (75%) Gaps:1/314 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSETLQLRGTLIGHNGWVTQIATNPKDPDTIISASRDKTLIVWKLTRDEDTNYGYPQKRLYGHSH 65
            |.|.|.||.||.||:||||.::|.|::||.::|.||||::|:|.|.|| |.|||..|:||.||||
pombe     1 MPEQLVLRATLEGHSGWVTSLSTAPENPDILLSGSRDKSIILWNLVRD-DVNYGVAQRRLTGHSH 64

  Fly    66 FISDVVLSSDGNYALSGSWDQTLRLWDLAAGKTTRRFEGHTKDVLSVAFSADNRQIVSGSRDKTI 130
            |:||..||.|.:||||.|||:|:|||||..|:.|.:|.|||.|||||:.|.||||:|||||||||
pombe    65 FVSDCALSFDSHYALSASWDKTIRLWDLEKGECTHQFVGHTSDVLSVSISPDNRQVVSGSRDKTI 129

  Fly   131 KLWNTLAECKFTIQEDGHTDWVSCVRFSPNHSNPIIVSCGWDRTVKVWNLANCKLKNNHHGHNGY 195
            |:||.:..||:||.:.||:|||||||||||..|...||.|||:.||||:|....|:.:|:||.||
pombe   130 KIWNIIGNCKYTITDGGHSDWVSCVRFSPNPDNLTFVSAGWDKAVKVWDLETFSLRTSHYGHTGY 194

  Fly   196 LNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHNDIINALCFSPNRYWLCVAYGPSIKIW 260
            ::.||:|||||||.|||:|...:|||||:..:||:||....||||.|||||||||.|.|.||:|:
pombe   195 VSAVTISPDGSLCASGGRDGTLMLWDLNESTHLYSLEAKANINALVFSPNRYWLCAATGSSIRIF 259

  Fly   261 DLACKKTVEELRPEVVSPTSKADQPQCLSLAWSTDGQTLFAGYSDNTIRVWQVS 314
            ||..::.|:||..:.|....|:.:|:|:||.||.||||||:|::||.||||||:
pombe   260 DLETQEKVDELTVDFVGVGKKSSEPECISLTWSPDGQTLFSGWTDNLIRVWQVT 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rack1NP_001260218.1 WD40 7..312 CDD:238121 181/304 (60%)
WD40 repeat 18..62 CDD:293791 23/43 (53%)
WD40 repeat 68..104 CDD:293791 21/35 (60%)
WD40 repeat 109..145 CDD:293791 25/35 (71%)
WD40 repeat 153..190 CDD:293791 20/36 (56%)
WD40 repeat 196..232 CDD:293791 20/35 (57%)
WD40 repeat 237..280 CDD:293791 24/42 (57%)
WD40 repeat 287..311 CDD:293791 16/23 (70%)
cpc2NP_593770.1 WD40 7..311 CDD:238121 181/304 (60%)
WD40 <7..310 CDD:225201 180/303 (59%)
WD40 repeat 18..61 CDD:293791 23/43 (53%)
WD40 repeat 67..103 CDD:293791 21/35 (60%)
WD40 repeat 108..144 CDD:293791 25/35 (71%)
WD40 repeat 152..189 CDD:293791 20/36 (56%)
WD40 repeat 195..231 CDD:293791 20/35 (57%)
WD40 repeat 236..275 CDD:293791 23/38 (61%)
WD40 repeat 286..310 CDD:293791 16/23 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0279
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4446
Inparanoid 1 1.050 412 1.000 Inparanoid score I360
OMA 1 1.010 - - QHG53895
OrthoFinder 1 1.000 - - FOG0003692
OrthoInspector 1 1.000 - - oto100735
orthoMCL 1 0.900 - - OOG6_101640
Panther 1 1.100 - - LDO PTHR19868
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R476
SonicParanoid 1 1.000 - - X2556
TreeFam 1 0.960 - -
1312.860

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