DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LanB1 and NTN1

DIOPT Version :10

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:NP_004813.2 Gene:NTN1 / 9423 HGNCID:8029 Length:604 Species:Homo sapiens


Alignment Length:520 Identity:161/520 - (30%)
Similarity:244/520 - (46%) Gaps:93/520 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 PCERSS-----CYPATGNLLIGRENRLTASSTCGLHSPERFCILSHLQDKK---CFLCDTREETK 104
            ||...:     |.|...|...|::.|:  ||||| ..|.|:|::|...:::   |.||:.     
Human    40 PCSDENGHPRRCIPDFVNAAFGKDVRV--SSTCG-RPPARYCVVSERGEERLRSCHLCNA----- 96

  Fly   105 HDPYKNHRIGQIIYKTKPGTNIPTWWQSENGKE---NATIQLDLEAEFHFTHLIITFTTFRPAAM 166
            .||.|.|....:.....| .|: |.|||||..:   |.|:.|.|..:|..|::.:.|.:.||.:|
Human    97 SDPKKAHPPAFLTDLNNP-HNL-TCWQSENYLQFPHNVTLTLSLGKKFEVTYVSLQFCSPRPESM 159

  Fly   167 YIERSFDFGQTWHIYRYFAYDCKESF---PGVPTVLENITDVMCTSRYSNVEPSRNGEVIFRVLP 228
            .|.:|.|:|:||..:::::..|::.:   ...|...:|..:.:||..::::.|...|.:.|..|.
Human   160 AIYKSMDYGRTWVPFQFYSTQCRKMYNRPHRAPITKQNEQEAVCTDSHTDMRPLSGGLIAFSTLD 224

  Fly   229 PNINVTD-PYAEHVQNQLKMTNLRIQMTKLHKLGD-NLLDSRLENEEKYYYGISNMVVRGSCSCY 291
            ...:..| ..:..:|:.:..|::|:..::||..|| |..||.|. .:.|:|.:|::.|.|.|.|.
Human   225 GRPSAHDFDNSPVLQDWVTATDIRVAFSRLHTFGDENEDDSELA-RDSYFYAVSDLQVGGRCKCN 288

  Fly   292 GHASQCLPLDPAFSQADNEDGMVHGRCECTHNTKGMNCEECEDFFNDLPWKPAFGKKTNACKKCE 356
            |||::|:        .|.:|.:|   |:|.|||.|..|:.|:.|..|.||:.|..::.|.|..|.
Human   289 GHAARCV--------RDRDDSLV---CDCRHNTAGPECDRCKPFHYDRPWQRATAREANECVACN 342

  Fly   357 CNDHAVSCHFDEAVFTASGFVSGGVCDNCLHNTRGQHCEECMPYFYRDPEQDITSERVCQPCDCD 421
            ||.||..|.|:..::..||..|||||.||.|||.|:||..|...:|||..:.||..:.|:.|||.
Human   343 CNLHARRCRFNMELYKLSGRKSGGVCLNCRHNTAGRHCHYCKEGYYRDMGKPITHRKACKACDCH 407

  Fly   422 PQGSSDDGICDSLNELEEGAVAGACHCKAFVTGRRCNQCKDGYWNLQSDNPEGCEPCTCNPLGTL 486
            |.|::.. .|:.        ..|.|.||..|||..||:|..||  .||.:|  ..||...|:.  
Human   408 PVGAAGK-TCNQ--------TTGQCPCKDGVTGITCNRCAKGY--QQSRSP--IAPCIKIPVA-- 457

  Fly   487 NNSGCVMRTGECKCKKYVTGKDCNQCMPETYGLS--ESPEGCSLCNCDAGGSYDNYCDVISGQCR 549
                                       |.|...|  |.||.|           |:||....|:.:
Human   458 ---------------------------PPTTAASSVEEPEDC-----------DSYCKASKGKLK 484

  Fly   550  549
            Human   485  484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 54..286 CDD:459653 70/242 (29%)
EGF_Lam 287..343 CDD:238012 21/55 (38%)
Laminin_EGF 355..415 CDD:395007 28/59 (47%)
Laminin_EGF 418..475 CDD:395007 21/56 (38%)
EGF_Lam 477..526 CDD:238012 9/50 (18%)
EGF_Lam 529..567 CDD:214543 4/21 (19%)
EGF_Lam 789..834 CDD:214543
Laminin_EGF 837..885 CDD:395007
Laminin_EGF 883..930 CDD:395007
Laminin_EGF 933..988 CDD:395007
Laminin_EGF 991..1035 CDD:395007
Laminin_EGF 1043..1091 CDD:395007
Laminin_EGF 1094..1142 CDD:395007
Laminin_EGF 1142..1190 CDD:395007
Mplasa_alph_rch 1228..>1771 CDD:275316
cc_DmLAMB1-like_C 1717..1786 CDD:411973
NTN1NP_004813.2 LamNT 46..283 CDD:214532 70/247 (28%)
EGF_Lam 284..329 CDD:238012 21/55 (38%)
Laminin_EGF 341..401 CDD:395007 28/59 (47%)
Laminin_EGF 404..>441 CDD:395007 16/45 (36%)
NTR_netrin-1_like 487..601 CDD:239634
Cell attachment site. /evidence=ECO:0000255 530..532
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.