DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB1 and lama1

DIOPT Version :9

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:NP_001030158.1 Gene:lama1 / 569971 ZFINID:ZDB-GENE-060118-1 Length:3075 Species:Danio rerio


Alignment Length:2159 Identity:523/2159 - (24%)
Similarity:796/2159 - (36%) Gaps:651/2159 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLELRLIVVIVLALLSWQWDPVDSQRPPQHGRRDRPKYPPNKFIKTHPCERSSCYPATGNLLIGR 65
            |:|:|:.::.:|||:......|::|   |.|                      .:||..||....
Zfish     1 MMEMRMKMLWLLALVFSSVICVEAQ---QRG----------------------LFPAILNLASNA 40

  Fly    66 ENRLTASSTCGLHSPERFC-ILSH-----LQDKKCFLCDTREETKHDPYKNHRIGQIIYKTKPGT 124
            |  ::.::|||...||.|| ::.|     :::.:|.:||...:   :|.:.|.|...|    .||
Zfish    41 E--ISTNATCGDPDPEMFCKLVEHVPGRRIRNPQCRICDANSQ---NPKEQHPITNAI----DGT 96

  Fly   125 NIPTWWQS---ENGKEN--ATIQLDLEAEFHFTHLII-TFTTFRPAAMYIERSFDFG---QTWHI 180
            |:  ||||   :||::.  .|:.|||...|...::|| ...:.||....:|||.| |   |.|..
Zfish    97 NL--WWQSPSIKNGRQFHWVTVTLDLRQVFQVAYIIIKAANSPRPGNWILERSLD-GVNFQPWQF 158

  Fly   181 YRYFAYDCKESF---PGV-PTVLENITDVMCTSRYSNVEPSRNGEVIFRVLPPNINVTDPYAEHV 241
            |.....:|...:   |.: |...:...:|:|||.||.:.|..:||:...::....:..|...|  
Zfish   159 YAISDTECLTRYNITPRIGPPTYKRDDEVICTSYYSRLVPLEHGEIHTSLINGRPSADDLTPE-- 221

  Fly   242 QNQLKMTN---LRIQMTKLHKLGDNLLDSRLENEE--------KYYYGISNMVVRGSCSCYGHAS 295
              .|:.|:   :|:::.::..|..:|:.....:.:        :|||.|.::.|.|.|.|||||.
Zfish   222 --LLEFTSARFIRLRLQRIRTLNADLMTLSYRDPKDVDPIVTRRYYYSIKDISVGGMCICYGHAQ 284

  Fly   296 QCLPLDPAFSQADNEDGMVHGRCECTHNTKGMNCEECEDFFNDLPWKPAFGKKTNACKKCECNDH 360
            .| |.||...:.         :|.|.|||.|.:|.||...::..||:|......|.|:||.|::.
Zfish   285 SC-PWDPVTKKL---------QCVCEHNTCGESCNECCPGYHQEPWQPGTLSDGNTCEKCNCHNK 339

  Fly   361 AVSCHFDEAVF-------TASGFVSGGVCDNCLHNTRGQHCEECMPYFYRDPEQDITSERVCQPC 418
            |..|.:::.|.       |...|..||||.||.|||.|.:||.|...:||..:....:|..|..|
Zfish   340 ADDCFYNQTVADLKLSMNTHGQFTGGGVCVNCRHNTAGVNCETCADGYYRPHQVSPYAEEPCVEC 404

  Fly   419 DCDPQGSSDDGIC---DSLNELEEGAVAGACHCKAFVTGRRCNQCKDGYWNLQSDNPEGCEPCTC 480
            .||.:||... :|   |:....:.|...|.|.||....|.:|::|..|:    .|.|. |..|.|
Zfish   405 QCDMRGSVSP-VCIRDDNHANPDAGLSPGQCVCKEGFAGEKCDRCAFGF----RDFPV-CSRCEC 463

  Fly   481 NPLGTLNNSGCVMRTGECKCKKYVTGKDCNQCMPETYGLSES-PEGCSLCNCDAGGSYDNYCDVI 544
            |..|:.|...|:    ||.||..|.|..|:.|....|.|..| ||||:.|          :|..:
Zfish   464 NLDGSHNTDPCM----ECVCKANVMGSHCDLCKQGFYNLQASNPEGCTEC----------FCFGV 514

  Fly   545 SGQCRC----------------RPHMTGRSCSQPKQNYFIPLLPEVHEAEVVDECISYGANGNCS 593
            |..|..                |.|.|..|...|                |.||        |..
Zfish   515 SDVCESSTWFSSSVVHRDGVLHRLHQTSISFWSP----------------VSDE--------NLI 555

  Fly   594 LVAETPDGSFTGIGFTRVPE---NSELVFTVGDIPRSMPYDAVIRYQSTSRGDWENAFITLVRPD 655
            :...:.|...:.:.....||   |::|......:..|:.||       ||.   ||...||....
Zfish   556 ISNRSTDADPSSVWTWAAPEPFLNNKLTSYGSFLNYSVAYD-------TSE---ENVDKTLRSHF 610

  Fly   656 QVDPEGGCGELAAATSSETRIPFSLPDRSRQVV-ALNEVCLEAGKVYKFRIYFERKRHDVDSPTA 719
            .|..||....|..|.|:  |:..:.....|..| .|.::.:::          ...|........
Zfish   611 SVIIEGNGRTLRQAQSA--RLLLNAHTHQRVFVQMLPQIFIDS----------HSGRSVQRDELM 663

  Fly   720 TILVDSLTLIPRIDVTPIFQGSVLADIRKKDYEKYNCKSSLYDMNYKSDPKCQNLDNILSVFVHD 784
            |:|.|...|..|.::....:|::                              .|.:: |:.|.|
Zfish   664 TVLADVAALRVRAELEDSAEGTL------------------------------RLSHV-SLGVGD 697

  Fly   785 GASMCNCNPTGSLSKVCESNGGYCQCKPNVVGRQCDQCAPGTYGFGPEGCKACDCNSIGSKDKYC 849
            ..|        .:||: ..:..:|:|.....|..|:.|.||.|..|                   
Zfish   698 SNS--------DVSKI-SLDVEHCECPWGYSGTSCELCIPGFYRVG------------------- 734

  Fly   850 DLITGQCQCVPNTYGRECNQCQPGYWNFPECRVCQCNGHAATCDPIQGTCIDCQDSTTGYSCDSC 914
            .::.|. .|:|                      |:||.||..|| |.|.|:.|..:|||..||.|
Zfish   735 GILFGG-NCLP----------------------CECNDHATECD-INGECLGCAHNTTGPHCDQC 775

  Fly   915 LDGYYGNPLFGSEIGCRPCRCPETVASGLAHADGCSLDTRNNNMLCHCQEGYSGSRCEICADNFF 979
            |.|:||:...|:...|:.|.||.|:||. ..:..|.|......:...||.||:|.:|:.|||.:|
Zfish   776 LPGFYGDASEGTPDDCQRCSCPLTLASN-NFSPTCQLQAPGEFICDQCQSGYTGDKCQRCADGYF 839

  Fly   980 GNP-DNGGTCSKCECSNNVDLYDTGNCDRQTGACLKCLYQTTGDHCELCKDGFFGDALQQ-NCQQ 1042
            |.| ..|..||.|||:.|||..:.|.||..||.||||:..|.|.|||.|:||::|||:|: |||.
Zfish   840 GEPVVPGQRCSPCECNGNVDPSEAGRCDTHTGECLKCVGHTAGPHCERCRDGYYGDAIQEKNCQA 904

  Fly  1043 CECDFLGTNNTIAHCDRFTGQCPCLPNVQGVRCDQCAENHWKIASGEGCESCNCDPIGAL----- 1102
            |.|...|:.:||  |:..||||.|..||.|..||:|.|.:..|.|||||..|.|:..|||     
Zfish   905 CGCYSNGSLSTI--CNLITGQCECKHNVVGKTCDRCQEGYHGINSGEGCRPCECNQSGALSASCD 967

  Fly  1103 ---------------------------------------HEQCNSYTGQCQCKPGFGGRACNQCQ 1128
                                                   |..||..||:|.|.|...|..|.||.
Zfish   968 EEGRCQCITGVTGDKCDRCHHGYYNFKENGCTACDCAHTHGNCNGQTGECICPPHTHGLKCEQCD 1032

  Fly  1129 AHYWGNPN-EKCQPCECDQFGAADFQCDRETGNCVCHEGIGGYKCNECARGYIGQFPHCSPC--- 1189
            ..:||:.. ..|:.|.|...|::..|||..:|.|||.....|..|:.||.|| ..||.||.|   
Zfish  1033 EGHWGHDGVSGCKVCNCSVVGSSSSQCDLSSGQCVCALQFSGLTCDRCALGY-RNFPQCSACDCN 1096

  Fly  1190 ---------------------GEC-------------FNNWDLILSALEDA-------------- 1206
                                 |:|             ..:....||||..|              
Zfish  1097 PNGTRAQFCDEALGVCGCEDHGQCSCKDNVGGRGCDECKSGSFGLSALNPAGCSPCFCFGLSDVC 1161

  Fly  1207 -TTATILRAKEIKQVGATGAYTSEFSELDKKLQHIRNLLQNTSVS----LVDIEKLDYETQSL-- 1264
             ..:.::||..:  :|::.|.....|:.|     ::..|:....|    |:|:::|:  ..||  
Zfish  1162 EELSGLVRAPIV--LGSSPALLRVVSQSD-----LQGTLEGVYYSDDEMLLDVDQLN--KLSLLT 1217

  Fly  1265 ------------RDQLQASHGRLSETEQNLDDIYNSLSLSGVELESLQ-------NHSR-LVQQL 1309
                        .::|.:..||||.|       ....:..||.|.:.:       .|.| ||...
Zfish  1218 GPYYWRLPQKYNGNKLLSYGGRLSYT-------LTFFAQDGVGLANQEPQVLMRGGHLRKLVIYT 1275

  Fly  1310 SKELKENGIQLQESNIEGALNLTRHAYERVSNLSTLKDEA------NELASNTD----------- 1357
            ......|||:..:.:.     ||.|.::..:::|   |||      ..:.||.:           
Zfish  1276 DASAPANGIRSTQEHA-----LTEHKWKYFNSVS---DEAVSHADFMSVLSNLEYVIIKASYGSG 1332

  Fly  1358 RNCKRVENLSNKIQAEADDLANNN---KLIE-------------------DYRAELTSLT----- 1395
            ....|:.|:|.:...|||:|....   :|:|                   .||..::.|.     
Zfish  1333 LQQSRISNISMETALEADELPEGGDVARLVEICECPPGYAGLSCQECAPGYYRQAVSELNMKGRN 1397

  Fly  1396 ---------------SQIPELNNQVC-----GKPGDPCD-----------------SLCG----- 1418
                           ||..:|:...|     ...|:.|.                 |||.     
Zfish  1398 RPLIQPCVPCRCSNHSQSCDLHTGQCLGCQHNTAGEHCHVCAAGYYGKVQGSVSDCSLCACPLRG 1462

  Fly  1419 ----------GAG---CGHC-----------------------GG---FLSCEHGAKTHSEEALK 1444
                      |||   |..|                       ||   ..:|......||     
Zfish  1463 QSFSSTCVLEGAGDFRCDRCEEGYEGRYCERCAVGYFGNPSEPGGRCQVCACSESGSVHS----- 1522

  Fly  1445 VAKDAETAITSKK--------DQADQTIRALTQAKLNASEAYEKA----KRGFEQSERYLNQTNA 1497
             ..||.|.....|        ||.::....:.:..::.:::....    ....:.|...:|.|..
Zfish  1523 -VCDAHTGRCECKPGVRGHLCDQCEERHVLVHEQCVSCNDSCTGVLLDDLDALDVSITSVNLTGV 1586

  Fly  1498 NIKLAENLFIALNNFQE-------------NKTASPSESKELAQKTLDL------------DLKL 1537
            .:.....|....|..:|             ..||....|:.|:.:..||            |:.|
Zfish  1587 ILAPYSQLMTIQNQTRELTSLMSWNQTPDYQLTAGEEHSRNLSGQITDLQQQVQSVFEDSGDVLL 1651

  Fly  1538 EPEEIETLGDQINRAVSSLKNVEAIIYRTKPDLDRVN----------NLQSIANATKEKADKI-- 1590
            ..|:..|.|.|:   :..:.|:.:.|:.....:..||          |...:...|.|..:||  
Zfish  1652 TSEQRFTQGKQL---LELINNIHSAIHGLVEQVSSVNVTLDEGLDEANSTFLLEETSETLEKIRS 1713

  Fly  1591 -------------LDSANSVVESLAAADESQGKAKDAIQQANSNIELAGQD-----------LEK 1631
                         |.||.||:|          |.:|.|.:...|.::..::           |::
Zfish  1714 FNLTHCRNAAEIQLSSAVSVLE----------KVEDEISKPYRNNQIRRENISTTLNTHNLSLQQ 1768

  Fly  1632 IDEETYSAEAPANNTAQQVEKLAKKVQKL---QNNIMKNDRDAKEITKEAGSVKLEAMRARGEAN 1693
            :.|..|:|:...|.:.:.::.:......|   :||:...:.:.:...:||..:..:|:..   |.
Zfish  1769 VQESLYTAKTHNNQSRRLLQDIQSNTHTLTISRNNVSSLNHELETQVQEAQDLLTDALNI---AE 1830

  Fly  1694 NLQSATSATNQTLTDRASRSENARERAKQLLQRASKLTVDTNAKLKDLNDLQTVY-LNKNQQLLR 1757
            ::.:..:..::...|....|.:.|:....|:...:|         :|.  ||.|| ...:.|.|.
Zfish  1831 DMDNGATTLDELKNDLELWSPSLRKHVDSLVMDLTK---------RDA--LQLVYRAEDHAQALS 1884

  Fly  1758 LQAEIGPLNKELNE 1771
            .||:  .||..|:|
Zfish  1885 KQAQ--ALNSSLSE 1896

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 63..286 CDD:278484 66/252 (26%)
EGF_Lam 287..343 CDD:238012 21/55 (38%)
Laminin_EGF 355..415 CDD:278482 23/66 (35%)
Laminin_EGF 418..475 CDD:278482 18/59 (31%)
EGF_Lam 477..526 CDD:238012 19/49 (39%)
EGF_Lam 529..567 CDD:214543 9/53 (17%)
EGF_Lam 789..834 CDD:214543 11/44 (25%)
Laminin_EGF 837..885 CDD:278482 4/47 (9%)
Laminin_EGF 883..930 CDD:278482 22/46 (48%)
Laminin_EGF 933..988 CDD:278482 21/55 (38%)
Laminin_EGF 991..1043 CDD:278482 30/52 (58%)
Laminin_EGF 1043..1091 CDD:278482 22/47 (47%)
Laminin_EGF 1094..1142 CDD:278482 20/92 (22%)
Laminin_EGF 1142..1190 CDD:278482 21/71 (30%)
COG6 1212..>1398 CDD:303003 51/270 (19%)
TelA 1439..1782 CDD:226371 74/410 (18%)
ApoLp-III_like 1545..1702 CDD:304399 33/195 (17%)
lama1NP_001030158.1 LamNT 25..275 CDD:214532 73/290 (25%)
EGF_Lam 277..324 CDD:238012 22/56 (39%)
EGF_Lam <364..390 CDD:238012 14/25 (56%)
Laminin_EGF 404..463 CDD:278482 20/64 (31%)
Laminin_EGF 461..506 CDD:278482 19/48 (40%)
Laminin_B 571..699 CDD:278481 34/180 (19%)
EGF_Lam 744..792 CDD:238012 23/70 (33%)
Laminin_EGF 809..849 CDD:278482 15/39 (38%)
EGF_Lam 851..903 CDD:238012 28/51 (55%)
Laminin_EGF 905..951 CDD:278482 22/47 (47%)
Laminin_EGF 954..1001 CDD:278482 5/46 (11%)
EGF_Lam 1000..1045 CDD:238012 14/44 (32%)
Laminin_EGF 1047..1095 CDD:278482 21/48 (44%)
Laminin_EGF 1093..1149 CDD:278482 8/55 (15%)
Laminin_B 1221..1346 CDD:278481 28/139 (20%)
EGF_Lam <1365..1385 CDD:238012 0/19 (0%)
Laminin_EGF 1407..1453 CDD:278482 6/45 (13%)
Laminin_EGF 1456..1509 CDD:278482 8/52 (15%)
Laminin_EGF 1512..>1549 CDD:278482 9/42 (21%)
Laminin_I 1580..1842 CDD:283627 48/277 (17%)
Baculo_PEP_C 1581..1711 CDD:282382 24/132 (18%)
Laminin_II 2015..2148 CDD:283628
LamG 2133..2281 CDD:238058
LamG 2310..2466 CDD:238058
LamG 2491..2641 CDD:238058
Laminin_G_1 2750..2877 CDD:278483
LamG 2897..3048 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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