DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB1 and si:dkey-202e22.2

DIOPT Version :9

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:XP_021335550.1 Gene:si:dkey-202e22.2 / 560497 ZFINID:ZDB-GENE-141215-27 Length:642 Species:Danio rerio


Alignment Length:608 Identity:183/608 - (30%)
Similarity:266/608 - (43%) Gaps:157/608 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 CERSSCYPATGNLLIGRENRLTASSTCGLHSPERFCILSHLQDKKCFLCDTREETK-HDPYKNHR 112
            |...:|.|..|||..|| ...|.:|.|             .....|.....|.:.: |.|     
Zfish    32 CVGRACSPPMGNLASGR-TLFTLTSCC-------------TNSSSCLPTQPRCQAELHPP----- 77

  Fly   113 IGQIIYKTKPGTNIPTWWQSENGK-ENATIQLDLEAEFHFTHLIITFTTFRPAAMYIERSFDFGQ 176
               .:....|.|:..|||.|.... |...|:||||..|..:|:::.|.:.|||||.:|||.||||
Zfish    78 ---ALMADDPFTHPDTWWGSTAASGEQEEIRLDLETRFCMSHVVMLFCSPRPAAMRLERSQDFGQ 139

  Fly   177 TWHIYRYFAYDCKESFPGVPTVLENITDVMCTSRYSNVEPSRNGEVIFRVLPPNINVTDPYAEHV 241
            ||...:.||.:|.|.| |:|..:.. :..:||||||:..|...||||||.:.....:.|||:...
Zfish   140 TWETLKLFARNCTEMF-GLPDDVSQ-SGAVCTSRYSSALPCSRGEVIFRSIGLGSGIVDPYSPQA 202

  Fly   242 QNQLKMTNLRIQMTK---------------------LHKLGDNLLDSRLENE---EKYYYGISNM 282
            .::|.:||||||:.|                     |..:....|.:.:.:.   :...:.:.::
Zfish   203 LSRLTVTNLRIQLLKSQQCPISKSQRSIPEQSNPSFLPTVPSRSLKAPIPSSDPLDSAPFAVYSL 267

  Fly   283 VVRGSCSCYGHASQCLPLDPAFSQADNE-------DGMVHGRCECTHNTKGMNCEECEDFFNDLP 340
            :.:|:|.|:|||..|||        :||       ..:|.|:|.|.|:|.|.:||.|...:||.|
Zfish   268 LAKGTCLCHGHAEHCLP--------ENEGQDSLQQSNVVSGKCVCAHHTAGDHCERCASLYNDQP 324

  Fly   341 WKPAFGK--KTNACKKCECNDHAVSCHFDEAVFTASGFVSGGVCDNCLHNTRGQHCEECMPYFYR 403
            |:.|.|.  ::|:|:||||:.|:.||||.:.|:.::|.:||||||:|.|||.|:.|:.|.|.::|
Zfish   325 WRAANGSSGESNSCQKCECHGHSESCHFSQRVWLSTGGISGGVCDHCQHNTAGRRCQRCRPGYHR 389

  Fly   404 DPEQDITSERVCQPCDCDPQGSSDDGICDSLNELEE-GAVAGACHCKAFVTGRRCNQCKDGYWNL 467
            .|.:.:.|...|..|.|||.||.   :..|.:|:.. ...:|.||||..|.|..|:.|..|:|..
Zfish   390 HPARPLNSPHACTRCWCDPAGSV---LVHSADEMPWCHPRSGQCHCKPGVGGTTCSHCLPGHWGF 451

  Fly   468 QSDNPEGCEPC----TCNPL--GTLNNSGCVMR-------------------------------- 494
               ..|||:||    ||:|:  ..|::.|.|..                                
Zfish   452 ---GEEGCKPCVCPLTCDPITGHCLDSKGSVRLYNVPIGGKIPELSHFKPQEDERAWPKELAVSA 513

  Fly   495 ---TGECKCKK---------------YV--------------------------TGK-DCNQCMP 514
               ||:|.||:               ||                          :|| ..:|...
Zfish   514 LYFTGKCSCKEKKLKSAADLCKMKHAYVIKASVLSAHDKGTHAVVLVKVRKVFRSGKLTLSQGTH 578

  Fly   515 ETYGLSESPEGCSLCNCDAGGSY 537
            ..|.||.:..||:....:.|.||
Zfish   579 TLYPLSWTSRGCTCPILNPGASY 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 63..286 CDD:278484 71/248 (29%)
EGF_Lam 287..343 CDD:238012 24/62 (39%)
Laminin_EGF 355..415 CDD:278482 27/59 (46%)
Laminin_EGF 418..475 CDD:278482 20/57 (35%)
EGF_Lam 477..526 CDD:238012 21/131 (16%)
EGF_Lam 529..567 CDD:214543 3/9 (33%)
EGF_Lam 789..834 CDD:214543
Laminin_EGF 837..885 CDD:278482
Laminin_EGF 883..930 CDD:278482
Laminin_EGF 933..988 CDD:278482
Laminin_EGF 991..1043 CDD:278482
Laminin_EGF 1043..1091 CDD:278482
Laminin_EGF 1094..1142 CDD:278482
Laminin_EGF 1142..1190 CDD:278482
COG6 1212..>1398 CDD:303003
TelA 1439..1782 CDD:226371
ApoLp-III_like 1545..1702 CDD:304399
si:dkey-202e22.2XP_021335550.1 Laminin_N 75..217 CDD:322101 61/151 (40%)
EGF_Lam 273..327 CDD:238012 24/61 (39%)
Laminin_EGF 341..394 CDD:278482 26/52 (50%)
EGF_Lam 404..456 CDD:214543 20/57 (35%)
NTR_netrin-4_like 530..640 CDD:239633 13/72 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0994
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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