DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB1 and Megf9

DIOPT Version :10

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:NP_001101410.1 Gene:Megf9 / 313270 RGDID:1308330 Length:599 Species:Rattus norvegicus


Alignment Length:259 Identity:90/259 - (34%)
Similarity:131/259 - (50%) Gaps:18/259 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   788 MCNCNPTGSLS-KVCESNGGYCQCKPNVVGRQCDQCAPGTYGFGPEG-CKACDCNSIGSKDKYCD 850
            ||||:..|||. |.|....|.|.|.....|..||.|..|.|.....| |..|.|:..|:....|:
  Rat   200 MCNCSEVGSLDVKRCNQTTGQCDCHVGYQGLHCDTCKEGFYLNHTVGLCLPCHCSPRGAVSILCN 264

  Fly   851 LITGQCQCVPNTYGRECNQCQPGYWNFPE--CRVCQCNGHAATCDPIQGTCIDCQDSTTGYSCDS 913
             .:|.|||.....|..|:|||.|::.|.:  |..||||..:.:||.:.|.|::||::|.|..|:.
  Rat   265 -SSGNCQCKLGVTGSMCDQCQDGHYGFGKTGCLPCQCNNRSDSCDVLTGACLNCQENTKGEHCEE 328

  Fly   914 CLDGYYGNPLFGSEIGCRPCRCPETVASGLAHADGCSLDTRNNNMLC-HCQEGYSGSRCEICADN 977
            |.:|:|.:|....|  |..|.|....::|     .|:::.......| .|::||:|..|..|.:.
  Rat   329 CKEGFYQSPDAARE--CLRCPCSAVTSTG-----NCTIEFGALEPTCDQCKDGYTGQNCNTCENG 386

  Fly   978 FFGNPDNGGTCSKCECSNNVDLYDTGN-CDRQTGACLKCLYQTTGDHCELCKDGFFGDALQQNC 1040
            ::   .:...|.:|||..:||...|.. |..::|.|:.||:.|||..||.|.:|:..| ||:||
  Rat   387 YY---HSDSICLQCECHGHVDPIKTPKICKPESGECINCLHNTTGLWCEKCLEGYVRD-LQRNC 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 54..286 CDD:459653
EGF_Lam 287..343 CDD:238012
Laminin_EGF 355..415 CDD:395007
Laminin_EGF 418..475 CDD:395007
EGF_Lam 477..526 CDD:238012
EGF_Lam 529..567 CDD:214543
EGF_Lam 789..834 CDD:214543 18/46 (39%)
Laminin_EGF 837..885 CDD:395007 17/49 (35%)
Laminin_EGF 883..930 CDD:395007 18/46 (39%)
Laminin_EGF 933..988 CDD:395007 11/55 (20%)
Laminin_EGF 991..1035 CDD:395007 18/44 (41%)
Laminin_EGF 1043..1091 CDD:395007
Laminin_EGF 1094..1142 CDD:395007
Laminin_EGF 1142..1190 CDD:395007
Mplasa_alph_rch 1228..>1771 CDD:275316
cc_DmLAMB1-like_C 1717..1786 CDD:411973
Megf9NP_001101410.1 PHA03247 <43..185 CDD:223021
Laminin_EGF 201..244 CDD:395007 17/42 (40%)
Laminin_EGF 251..298 CDD:395007 16/47 (34%)
EGF_Lam 297..343 CDD:238012 18/47 (38%)
EGF_Lam 362..398 CDD:238012 8/38 (21%)
Laminin_EGF 397..441 CDD:395007 18/43 (42%)
Blue background indicates that the domain is not in the aligned region.

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