DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB1 and Megf9

DIOPT Version :9

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:NP_001101410.1 Gene:Megf9 / 313270 RGDID:1308330 Length:599 Species:Rattus norvegicus


Alignment Length:259 Identity:90/259 - (34%)
Similarity:131/259 - (50%) Gaps:18/259 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   788 MCNCNPTGSLS-KVCESNGGYCQCKPNVVGRQCDQCAPGTYGFGPEG-CKACDCNSIGSKDKYCD 850
            ||||:..|||. |.|....|.|.|.....|..||.|..|.|.....| |..|.|:..|:....|:
  Rat   200 MCNCSEVGSLDVKRCNQTTGQCDCHVGYQGLHCDTCKEGFYLNHTVGLCLPCHCSPRGAVSILCN 264

  Fly   851 LITGQCQCVPNTYGRECNQCQPGYWNFPE--CRVCQCNGHAATCDPIQGTCIDCQDSTTGYSCDS 913
             .:|.|||.....|..|:|||.|::.|.:  |..||||..:.:||.:.|.|::||::|.|..|:.
  Rat   265 -SSGNCQCKLGVTGSMCDQCQDGHYGFGKTGCLPCQCNNRSDSCDVLTGACLNCQENTKGEHCEE 328

  Fly   914 CLDGYYGNPLFGSEIGCRPCRCPETVASGLAHADGCSLDTRNNNMLC-HCQEGYSGSRCEICADN 977
            |.:|:|.:|....|  |..|.|....::|     .|:::.......| .|::||:|..|..|.:.
  Rat   329 CKEGFYQSPDAARE--CLRCPCSAVTSTG-----NCTIEFGALEPTCDQCKDGYTGQNCNTCENG 386

  Fly   978 FFGNPDNGGTCSKCECSNNVDLYDTGN-CDRQTGACLKCLYQTTGDHCELCKDGFFGDALQQNC 1040
            ::   .:...|.:|||..:||...|.. |..::|.|:.||:.|||..||.|.:|:..| ||:||
  Rat   387 YY---HSDSICLQCECHGHVDPIKTPKICKPESGECINCLHNTTGLWCEKCLEGYVRD-LQRNC 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 63..286 CDD:278484
EGF_Lam 287..343 CDD:238012
Laminin_EGF 355..415 CDD:278482
Laminin_EGF 418..475 CDD:278482
EGF_Lam 477..526 CDD:238012
EGF_Lam 529..567 CDD:214543
EGF_Lam 789..834 CDD:214543 18/46 (39%)
Laminin_EGF 837..885 CDD:278482 17/49 (35%)
Laminin_EGF 883..930 CDD:278482 18/46 (39%)
Laminin_EGF 933..988 CDD:278482 11/55 (20%)
Laminin_EGF 991..1043 CDD:278482 23/51 (45%)
Laminin_EGF 1043..1091 CDD:278482
Laminin_EGF 1094..1142 CDD:278482
Laminin_EGF 1142..1190 CDD:278482
COG6 1212..>1398 CDD:303003
TelA 1439..1782 CDD:226371
ApoLp-III_like 1545..1702 CDD:304399
Megf9NP_001101410.1 Baseplate_J <54..>175 CDD:294789
Laminin_EGF 201..244 CDD:278482 17/42 (40%)
Laminin_EGF 251..298 CDD:278482 16/47 (34%)
EGF_Lam 297..343 CDD:238012 18/47 (38%)
EGF_Lam 362..398 CDD:238012 8/38 (21%)
Laminin_EGF 397..441 CDD:278482 18/43 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0994
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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