Sequence 1: | NP_476618.1 | Gene: | LanB1 / 34068 | FlyBaseID: | FBgn0261800 | Length: | 1788 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001380677.1 | Gene: | Lama3 / 307582 | RGDID: | 628776 | Length: | 3333 | Species: | Rattus norvegicus |
Alignment Length: | 2644 | Identity: | 562/2644 - (21%) |
---|---|---|---|
Similarity: | 852/2644 - (32%) | Gaps: | 1153/2644 - (43%) |
- Green bases have known domain annotations that are detailed below.
Fly 6 LIVVIVLALLSWQWDPVDSQRPPQHGRRDRPKYPPNKFIKTHPCERSSCYPATGNLLIGRENRLT 70
Fly 71 ASSTCGLHS-------PERFCIL---------SH-LQDKKCFLCDTREETKHDPYKNHRIGQIIY 118
Fly 119 KTKPGTNIPTWWQS-------ENGKENATIQLDLEAEFHFTHLIITFTTF-RPAAMYIERSFDFG 175
Fly 176 QTWHIYRYFAY---DCKESFPGVPTVLENITD-VMCTSRYSNVEPSRNGEVIFRVLPPNINVTDP 236
Fly 237 YAEH------VQNQLKMTNLRIQMTKLHKLGDNLLDSRLENE----EKYYYGISNMVVRGSCSCY 291
Fly 292 GHASQCLPLDPAFSQADNEDGMVHGRCECTHNTKGMNCEECEDFFNDLPWKPAFGKKTNACKKCE 356
Fly 357 CNDHAVSCHFDEAV------FTASG-FVSGGVCDNCLHNTRGQHCEECMPYFYRDPEQDITSERV 414
Fly 415 CQPCDCDP-------QGSS----------------DDG--------------------------- 429
Fly 430 --------------ICDS--------------LNELEEGAVA----------------------- 443
Fly 444 GACHCKAFVTGRRCNQCKDG--------------------------------------------Y 464
Fly 465 WNLQSDNPEGCEPCTCNPLGTLNNSG-CVMRTGECKCKKYVTGKDCNQCMPETYGLSESPE-GCS 527
Fly 528 LCNCDAGGSYDNYCDVISGQCRCRPHMTGRSCSQPKQN-YFIPLLPEVHEAEVVDECISYGANGN 591
Fly 592 CSLVA----ETPDGSFTG-IGFTRVPENSELVFTVGDIPRSMPYDAVIRYQS------------- 638
Fly 639 TSRG--------------DWENAFITL----------VRPD------QVD--------------- 658
Fly 659 ------------------PEGGC-------------------------GE---LA---------- 667
Fly 668 ----AATSSETRIPFSLPDRSRQVVALN-----------EVCLE------AGKV----YKFRI-- 705
Fly 706 -----------------------------------------------YFERKRHDVDS------- 716
Fly 717 ------------PTATIL---------------------VDSLTL-IPRIDVT------------ 735
Fly 736 -------------------------------------------PIFQGSVLADIRKKDY------ 751
Fly 752 ----------------EKYNC---------KSSLY------DMNYKSDPK-----CQNLDNILSV 780
Fly 781 FVHDGASMCNCNPTGSLSKVCESNGGYCQCKPNVVGRQCDQCAPGTYGF---------------- 829
Fly 830 -----------GPE---------------GCKACDCNSIGSKD---KYCDLITGQCQCVPNTYGR 865
Fly 866 ECNQCQPGYWNFPECRVCQCN---GHAATCDPIQGTCIDCQDSTTGYSCDSCLDGYY----GNPL 923
Fly 924 FGSEIGCRPCRC---------------------------------------------------PE 937
Fly 938 TVAS----------------------------GL------------------------------- 943
Fly 944 ----------------AHADGCSLDTRNNNM---------------------------------- 958
Fly 959 -----------LCHCQEGYSGSRCEICADNFFGNPDN--GGTCSKCECSNNVDLYDTGNCDRQTG 1010
Fly 1011 ACLKCLYQTTGDHCELCKDGFFGDALQQNCQQCECDFLGTNNTIAHCDRFTGQCPCLPNVQGVRC 1075
Fly 1076 DQCAENHWKIASGEGCESCNCDPIGALHEQCNSYTGQCQCKPGFGGRACNQCQAHYWGNPNE--- 1137
Fly 1138 KCQPCECD---QFGAADFQCDRETGNCVCHEGIGGYKCNECARGYIGQFPHCSPC---------- 1189
Fly 1190 -GECFNNWDLILSALEDATTAT---------ILRAKEIKQ--VGATGAYTSEFSELD---KKLQH 1239
Fly 1240 IRNLLQNTSVSLVDIEKLDYETQSLRDQLQASHGRLSETEQNLDD-IYNSLSLSGVELESLQNHS 1303
Fly 1304 RLVQQL---------------SKELKENGIQLQE---------------SNIEGALNLTR----- 1333
Fly 1334 --HAYERVSNLSTLKDEANELASN-------------------------------TDRNCKRVEN 1365
Fly 1366 LSNKIQ---AEAD-DLANNNKLIE-------DYRAELTSLTSQIPELNNQVCGKPGDPCDSLCGG 1419
Fly 1420 AGCGHCGGFLSCEHGAKTHSEEALKVAKDAETAITSKKDQADQTIRALTQAKLNASEAYEKAKRG 1484
Fly 1485 FEQSERYLNQTNANIKLAENLFIALNNFQENKTASPSES-------KELAQ--KTLDLDLKLEPE 1540
Fly 1541 EI--------ETLGDQINRAVSSLKN-----------VEAIIYRTKPDLDRV--NNLQSIANATK 1584
Fly 1585 EKADKILDSANSVVESLAAADESQGKAKDAIQQANSNIELAGQDLEKIDEETYSAEAPANNTAQQ 1649
Fly 1650 VEKLAKKVQKLQNNIMKNDRDAKEITKEAGSVKLEAMRARGEANNLQSATSATNQTLTDRASRSE 1714
Fly 1715 NARERAKQLLQR----ASKLTVDT--NAKL-------KDLNDLQ 1745 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LanB1 | NP_476618.1 | Laminin_N | 63..286 | CDD:278484 | 72/261 (28%) |
EGF_Lam | 287..343 | CDD:238012 | 20/55 (36%) | ||
Laminin_EGF | 355..415 | CDD:278482 | 24/66 (36%) | ||
Laminin_EGF | 418..475 | CDD:278482 | 29/201 (14%) | ||
EGF_Lam | 477..526 | CDD:238012 | 17/50 (34%) | ||
EGF_Lam | 529..567 | CDD:214543 | 16/38 (42%) | ||
EGF_Lam | 789..834 | CDD:214543 | 23/86 (27%) | ||
Laminin_EGF | 837..885 | CDD:278482 | 20/50 (40%) | ||
Laminin_EGF | 883..930 | CDD:278482 | 15/53 (28%) | ||
Laminin_EGF | 933..988 | CDD:278482 | 18/227 (8%) | ||
Laminin_EGF | 991..1043 | CDD:278482 | 16/51 (31%) | ||
Laminin_EGF | 1043..1091 | CDD:278482 | 7/47 (15%) | ||
Laminin_EGF | 1094..1142 | CDD:278482 | 16/50 (32%) | ||
Laminin_EGF | 1142..1190 | CDD:278482 | 17/61 (28%) | ||
COG6 | 1212..>1398 | CDD:303003 | 50/270 (19%) | ||
TelA | 1439..1782 | CDD:226371 | 75/350 (21%) | ||
ApoLp-III_like | 1545..1702 | CDD:304399 | 32/169 (19%) | ||
Lama3 | NP_001380677.1 | LamNT | 42..293 | CDD:214532 | 76/271 (28%) |
EGF_Lam | 294..340 | CDD:238012 | 20/55 (36%) | ||
EGF_Lam | 351..419 | CDD:238012 | 24/67 (36%) | ||
EGF_Lam | 421..461 | CDD:238012 | 10/39 (26%) | ||
Laminin_EGF | 487..534 | CDD:395007 | 4/46 (9%) | ||
EGF_Lam | 531..573 | CDD:238012 | 11/41 (27%) | ||
Laminin_EGF | 627..677 | CDD:395007 | 17/49 (35%) | ||
EGF_Lam | 680..723 | CDD:238012 | 19/46 (41%) | ||
Laminin_EGF | 1265..1313 | CDD:395007 | 22/47 (47%) | ||
EGF_Lam | 1310..1353 | CDD:238012 | 2/42 (5%) | ||
EGF_Lam | 1355..1400 | CDD:238012 | 16/44 (36%) | ||
EGF_Lam | 1403..1453 | CDD:238012 | 16/55 (29%) | ||
Laminin_B | 1517..1651 | CDD:395006 | 6/133 (5%) | ||
EGF_Lam | 1685..1731 | CDD:238012 | 15/50 (30%) | ||
EGF_Lam | 1733..1784 | CDD:238012 | 21/99 (21%) | ||
Laminin_I | 1846..2103 | CDD:310534 | 50/273 (18%) | ||
SMC_prok_B | 2031..>2387 | CDD:274008 | 90/453 (20%) | ||
Laminin_II | 2287..2415 | CDD:368703 | 38/176 (22%) | ||
LamG | 2434..2569 | CDD:214598 | |||
LamG | 2601..2741 | CDD:238058 | |||
LamG | 2768..2900 | CDD:238058 | |||
LamG | 2992..3134 | CDD:238058 | |||
LamG | 3158..3309 | CDD:238058 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |