DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB1 and Lamb3

DIOPT Version :9

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:NP_001094311.1 Gene:Lamb3 / 305078 RGDID:1562668 Length:1172 Species:Rattus norvegicus


Alignment Length:1813 Identity:385/1813 - (21%)
Similarity:578/1813 - (31%) Gaps:720/1813 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 PNKFIKTHPCERSSCYPATGNLLIGRENRLTASSTCGLHSPERFCILSHLQDKKCFLCDTREETK 104
            |.......||.|.:|||..|:|||||...|.|||||||..||.:|........||..||:|....
  Rat    13 PGLLCAQQPCSRGACYPPVGDLLIGRTQLLRASSTCGLTKPETYCTQYGQWQMKCCKCDSRLPRN 77

  Fly   105 HDPYKNHRIGQIIYKTKPGTNIPTWWQSENGKENATIQLDLEAEFHFTHLIITFTTFRPAAMYIE 169
               |.:||:..::..:.|    ..||||:|.....::||||:.......:::.|....||.|.||
  Rat    78 ---YNSHRVENVVSSSGP----MRWWQSQNDVSPVSLQLDLDKRMQLQDIMMDFKGLMPAGMLIE 135

  Fly   170 RSFDFGQTWHIYRYFAYDCKESFP----GVPTVLENITDVMCTSRYSNVEPS---RNGEVIFRVL 227
            ||.|||:||.:|:|.|.||..:||    |.|   :|..||.|  |..:..|:   ..|:|...::
  Rat   136 RSSDFGKTWRVYQYLATDCASTFPQVHQGQP---KNWQDVRC--RPLSQRPNGHLTGGKVQLNLM 195

  Fly   228 PPNINVTDPYAEHVQNQLKMTNLRIQMTKLHKLGDNLLDSRLENEEKYYYGISNMVVRGSCSCYG 292
            .....:....::.:|....:||||:..|||..     :..|.......|:.:|.:.::|||.|:|
  Rat   196 DLASAIPASQSKKIQELGDITNLRVNFTKLAP-----VPQRGSYPPSAYFAVSQLRLQGSCFCHG 255

  Fly   293 HASQCLPLDPAFSQADNEDGMVHGRCECTHNTKGMNCEECEDFFNDLPWKPAFGKKTNACKKCEC 357
            ||.:|.| :|...........|:..|.|.|||.|.||:.|..|:|:.||:||.|:..:.|::|:|
  Rat   256 HADRCAP-NPGGPTGSTTAVQVNDVCVCQHNTAGPNCDRCAPFYNNRPWRPAEGQDIHECQRCDC 319

  Fly   358 NDHAVSCHFDEAVFTASGFVSGGVCDNCLHNTRGQHCEECMPYFYRDPEQDITSERVCQPCDCDP 422
            |.|:.:||||.|||.||...||||||||..:|.|::||.|..:::|:..........|.||:|||
  Rat   320 NGHSETCHFDPAVFAASQGTSGGVCDNCQDHTEGKNCERCQLHYFRNRRPGAPIHETCIPCECDP 384

  Fly   423 QGSSDDGICDSLNELEEGAVAGACHCKAFVTGRRCNQCKDGYWNLQSDNPEGCEPCTCNPLGTLN 487
            .|:.....||.|        .|.|.||..|.|.||:.||.|:..|...||:||.||.|:.|||  
  Rat   385 DGAVPGAPCDRL--------TGQCVCKDHVQGERCDLCKPGFTGLTFANPQGCHPCDCSILGT-- 439

  Fly   488 NSGCVMRTGECKCKKYVTGKDCNQCMPETYGLSESPEGCSLCNCDAGGSYDNYCDVISGQCRCRP 552
                                  .|.||                                      
  Rat   440 ----------------------RQDMP-------------------------------------- 444

  Fly   553 HMTGRSCSQPKQNYFIPLLPEVHEAEVVDECISYGANGNCSLVAETPDGSFTGIGFTRVPENSEL 617
                                                                             
  Rat   445 ----------------------------------------------------------------- 444

  Fly   618 VFTVGDIPRSMPYDAVIRYQSTSRGDWENAFITLVRPDQVDPEGGCGELAAATSSETRIPFSLPD 682
                                                                             
  Rat   445 ----------------------------------------------------------------- 444

  Fly   683 RSRQVVALNEVCLEAGKVYKFRIYFERKRHDVDSPTATILVDSLTLIPRIDVTPIFQGSVLADIR 747
                                                                             
  Rat   445 ----------------------------------------------------------------- 444

  Fly   748 KKDYEKYNCKSSLYDMNYKSDPKCQNLDNILSVFVHDGASMCNCNPTGSLSKVCESNGGYCQCKP 812
                                                                             
  Rat   445 ----------------------------------------------------------------- 444

  Fly   813 NVVGRQCDQCAPGTYGFGPEGCKACDCNSIGSKDKYCDLITGQCQCVPNTYGRECNQCQPGYWNF 877
                                                                             
  Rat   445 ----------------------------------------------------------------- 444

  Fly   878 PECRVCQCNGHAATCDPIQGTCIDCQDSTTGYSCDSCLDGYYGNPLFGSEIGCRPCRCPETVASG 942
                                                                             
  Rat   445 ----------------------------------------------------------------- 444

  Fly   943 LAHADGCSLDTRNNNMLCHCQEGYSGSRCEICADNFFGNPDNGGTCSKCECSNNVDLYDTGNCDR 1007
                                                                          |:.
  Rat   445 --------------------------------------------------------------CEE 447

  Fly  1008 QTGACLKCLYQTTGDHCELCKDGFFGDALQQNCQQCECDFLGTNNTIAHCDRFTGQCPCLPNVQG 1072
            :||.||                                                    |||||.|
  Rat   448 ETGRCL----------------------------------------------------CLPNVVG 460

  Fly  1073 VRCDQCAENHWKIASGEGCESCNCDPIGALHEQCNSYTGQCQCKPGFGGRACN-----QCQAHYW 1132
            .:|||||.:|||:|||.|||.|.|||..:|..|||.:||||.|:.||||..|:     ||.....
  Rat   461 PKCDQCAPSHWKLASGRGCEPCACDPRNSLSSQCNQFTGQCPCREGFGGLTCSSAAIRQCPDRTH 525

  Fly  1133 GNPNEKCQPCECDQFGAADFQCDRETGNCVCHEGIGGYKCNECARGYIGQFPHCSPCGECFNNWD 1197
            |:....|:.|:||..|.....||:.:|.|:|..|:.|.:|::|.|||..::|.|..|..||..:|
  Rat   526 GDVATGCRACDCDFRGTEGPGCDKTSGRCLCRPGLTGPRCDQCQRGYCDRYPVCVACHSCFQAYD 590

  Fly  1198 L-------ILSALEDAT----TATILRAKEIKQVGATGAYTSEFSELDKKLQHIRNLLQNTSVSL 1251
            .       .|.:|.:.|    |.|.|..:.:         .|...:...|::.||.:|..|||:.
  Rat   591 TDLQEQAWRLGSLRNTTEGLGTGTGLEDRGL---------ASRLLDAKSKIEQIRQILGGTSVTE 646

  Fly  1252 VDIEKLDYETQSLRDQLQASHGRLSETEQ---------NLDDIYNSLSLSGVELESLQNHSRLVQ 1307
            .|:.::.....|:|..||.....|...|:         |||..:|.|.|                
  Rat   647 RDVAQVANAILSIRRTLQGLPLDLPLEEEMESFSGDLGNLDRSFNRLLL---------------- 695

  Fly  1308 QLSKELKENGIQLQESNIEGALNLTRHAYERVSNLSTLKDEANELASNTDRNCKRVENLSNKIQA 1372
             :.:..||...:|...:..||..:...|||:.|..:....:::.|.|....:.:.||.|..:   
  Rat   696 -MYRSKKEQFEKLSSVDPSGAFRMLTMAYEQSSRAAQQVSDSSSLLSQLRDSRREVEGLERQ--- 756

  Fly  1373 EADDLANNNKLIEDYRAELTSLTSQIPELNNQVCG-------KPGDPCDSLC---GGAGCG-HCG 1426
            ..:..|...:|:. .|.|:.||....|.: |::||       .|||....||   .|..|| ||.
  Rat   757 TGEGGAGGAQLMA-LRLEMASLPDLTPTI-NKLCGGSRQTACTPGDCPGLLCPQDNGTACGSHCR 819

  Fly  1427 GFLSCEHGAKTHSEEALKVAKDAETAITSKKDQADQTIRALTQAKLNASEAYEKAKRGFEQSERY 1491
            |.|....|       ||.:|......:.|...|..||.:.:..|:..||:....|:|...|....
  Rat   820 GALPRARG-------ALHMAGQVAEQLRSFNTQLQQTRQMIRAAEEAASKVQSDAQRLETQVSTS 877

  Fly  1492 LNQTNANIKLAENLFIALNNFQENKTASPSESKELAQKTLDLDLKLEPEEIETLGDQINRAVSSL 1556
            ..|...:::....|...:..|..:.....:..:::::..|.|.|..:...:.....:|....:.|
  Rat   878 RLQMEEDVRRTRLLIQQVRGFLTDPHTDAATIQQVSEAVLALWLPTDSATVLRKMKEIQDIAARL 942

  Fly  1557 KNVEAIIYRTKPDLDRVNNLQSIANATKEKADKILDSANSVVESLAAADESQGKAKDAIQQANSN 1621
            .||:.::.:||.|:.|...||:.|...:.:|..:....:.||.:|     .||..  |:|:|...
  Rat   943 PNVDLVLSQTKQDIARARRLQAEAEKARSRAHVVEGQVDDVVGNL-----RQGTV--ALQEAQDT 1000

  Fly  1622 IELAGQDLEKIDEETYSAEAPANNTAQQV----EKLAKKVQKLQNNIMKNDRDAKEITKEAGSVK 1682
            ::..|:.|..|.|..        ...|||    |:|.|.:::..:.....   .||:..:|...:
  Rat  1001 MQGTGRSLRLIQERV--------TEVQQVLVPAERLVKGMKEQMSGFWAR---VKELRHQAQEEQ 1054

  Fly  1683 LEAMRARGEANNLQSATSATNQT----------------LTDRASRSENARERAKQLLQ---RAS 1728
            .:||:|:      |.|..|:||.                |.||..:|....|:..::|.   .|.
  Rat  1055 AQAMKAQ------QLAEGASNQAMNAQEGFERLKQRYTELKDRLGQSSMLGEQGNRILSIKAEAE 1113

  Fly  1729 KLTVDTNAKLKDLNDLQTVYLNKNQQLLRLQAEIGPLNKELNEHLIHIKERGSHYRQC 1786
            :|..:|...:..:.|:::..|..:|.::...|::..|.|.:.:...:|..|..:|..|
  Rat  1114 ELFGETMEMMDKMKDMESELLRGSQAIMLRSADLSGLEKRVEQIRSYINGRVLYYATC 1171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 63..286 CDD:278484 73/229 (32%)
EGF_Lam 287..343 CDD:238012 23/55 (42%)
Laminin_EGF 355..415 CDD:278482 27/59 (46%)
Laminin_EGF 418..475 CDD:278482 22/56 (39%)
EGF_Lam 477..526 CDD:238012 9/48 (19%)
EGF_Lam 529..567 CDD:214543 0/37 (0%)
EGF_Lam 789..834 CDD:214543 0/44 (0%)
Laminin_EGF 837..885 CDD:278482 0/47 (0%)
Laminin_EGF 883..930 CDD:278482 0/46 (0%)
Laminin_EGF 933..988 CDD:278482 0/54 (0%)
Laminin_EGF 991..1043 CDD:278482 5/51 (10%)
Laminin_EGF 1043..1091 CDD:278482 17/47 (36%)
Laminin_EGF 1094..1142 CDD:278482 22/52 (42%)
Laminin_EGF 1142..1190 CDD:278482 18/47 (38%)
COG6 1212..>1398 CDD:303003 42/194 (22%)
TelA 1439..1782 CDD:226371 77/365 (21%)
ApoLp-III_like 1545..1702 CDD:304399 38/160 (24%)
Lamb3NP_001094311.1 Laminin_N 21..249 CDD:295486 82/244 (34%)
EGF_Lam 250..305 CDD:238012 23/55 (42%)
Laminin_EGF 317..367 CDD:278482 27/49 (55%)
Laminin_EGF 380..429 CDD:278482 22/56 (39%)
EGF_Lam 431..480 CDD:238012 32/614 (5%)
Laminin_EGF 482..535 CDD:278482 22/52 (42%)
EGF_Lam 535..572 CDD:214543 14/36 (39%)
SPEC 909..1092 CDD:295325 46/206 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0994
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10574
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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