DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB1 and Tmeff1

DIOPT Version :10

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:NP_001343201.1 Gene:Tmeff1 / 230157 MGIID:1926810 Length:373 Species:Mus musculus


Alignment Length:319 Identity:77/319 - (24%)
Similarity:106/319 - (33%) Gaps:118/319 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   985 GGTC----SKCECSN-NVDLYDTGNCDRQTGACLKCLYQTTGDHCELCKDGFFGDALQQNCQ-QC 1043
            ||.|    .|..||. |:...|...||..:     |.|.      .:||:.  ||.|:..|| ||
Mouse    44 GGDCPGGRGKSNCSELNLRESDIRVCDESS-----CKYG------GVCKED--GDGLKCACQFQC 95

  Fly  1044 ECDFL---GTNNTIAHCDRFTGQCPCLPNVQGVRCDQCAENHWK----IASGEGCESCNCDPIGA 1101
            ..:::   |:|.     |.:..:|       .:|...|  .|.|    :|.|. |.|.|....|.
Mouse    96 HTNYIPVCGSNG-----DTYQNEC-------FLRRAAC--KHQKDITVVARGP-CYSDNGSGSGE 145

  Fly  1102 LHEQCNSYTGQCQCKPGFGGRACNQCQAHYWGNPNEKCQPC----ECDQFGAADFQCDRETGNCV 1162
            ..|:..|..|                 ||   ..:.||.||    |||:        |.|...||
Mouse   146 GAEEEGSGAG-----------------AH---RKHSKCGPCKYKAECDE--------DAENVGCV 182

  Fly  1163 CHEGIGGYKCNECARGYIGQFPHCSPCGECFNNWDLILSALEDATTATILRAKEIKQVGATGAYT 1227
            |:....||..|          |.|:..|..:||            ...:..|..|||        
Mouse   183 CNIDCSGYSFN----------PVCASDGSSYNN------------PCFVREASCIKQ-------- 217

  Fly  1228 SEFSELDKKLQHIRNLLQNTSVSLVDIEKLDYETQSLRDQLQASHGRLSETEQNLDDIY 1286
               .::|  ::|:.:......|||  :.|.|...|...|...|...|        :|:|
Mouse   218 ---EQID--IRHLGHCTDTDDVSL--LGKKDDGLQYRPDVKDAGDER--------EDVY 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 54..286 CDD:459653
EGF_Lam 287..343 CDD:238012
Laminin_EGF 355..415 CDD:395007
Laminin_EGF 418..475 CDD:395007
EGF_Lam 477..526 CDD:238012
EGF_Lam 529..567 CDD:214543
EGF_Lam 789..834 CDD:214543
Laminin_EGF 837..885 CDD:395007
Laminin_EGF 883..930 CDD:395007
Laminin_EGF 933..988 CDD:395007 2/2 (100%)
Laminin_EGF 991..1035 CDD:395007 11/44 (25%)
Laminin_EGF 1043..1091 CDD:395007 11/54 (20%)
Laminin_EGF 1094..1142 CDD:395007 9/47 (19%)
Laminin_EGF 1142..1190 CDD:395007 14/51 (27%)
Mplasa_alph_rch 1228..>1771 CDD:275316 13/59 (22%)
cc_DmLAMB1-like_C 1717..1786 CDD:411973
Tmeff1NP_001343201.1 KAZAL 91..135 CDD:197624 14/58 (24%)
KAZAL 182..228 CDD:197624 16/80 (20%)
PHA02887 <268..304 CDD:165214
Blue background indicates that the domain is not in the aligned region.

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