DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LanB1 and unc-6

DIOPT Version :10

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:NP_509165.1 Gene:unc-6 / 180961 WormBaseID:WBGene00006746 Length:612 Species:Caenorhabditis elegans


Alignment Length:543 Identity:148/543 - (27%)
Similarity:232/543 - (42%) Gaps:135/543 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 SQRPPQHGRRDRPKYPPNKFIKTHPCERSS-----CYPATGNLLIGRENRLTASSTCGLHSPERF 83
            |.|.|.|                .||...:     |.|...|...|:.  :.||.|||.:.|:::
 Worm    28 SMRAPDH----------------DPCHDHTGRPVRCVPEFINAAFGKP--VIASDTCGTNRPDKY 74

  Fly    84 CILSHLQD----KKCFLCDTREETKHDPYKNHRIGQIIYKTKPGT---------NIPTWWQSEN- 134
            |.:....|    ::|..||.|         ||      :::.|.:         |:..|..:.: 
 Worm    75 CTVKEGPDGIIREQCDTCDAR---------NH------FQSHPASLLTDLNSIGNMTCWVSTPSL 124

  Fly   135 GKENATIQLDLEAEFHFTHLIITFTTFRPAAMYIERSFDFGQTWHIYRYFAYDCKESF---PGVP 196
            ..:|.::.|.|..:|..|::.:.|.:..|.:|.:.:|.|||:||..:::::.:|:..|   |.|.
 Worm   125 SPQNVSLTLSLGKKFELTYVSMHFCSRLPDSMALYKSADFGKTWTPFQFYSSECRRIFGRDPDVS 189

  Fly   197 TVLENITDVMCTSRYSNVEPSRNGEVIFRVLPPNIN-VTDPYAEH------------VQNQLKMT 248
            ....|..:.:||:.:              ::.|..| |..|:.|:            :|:.:..|
 Worm   190 ITKSNEQEAVCTASH--------------IMGPGGNRVAFPFLENRPSAQNFENSPVLQDWVTAT 240

  Fly   249 NLRIQMTKL--------------HKLGDNLLDSRLENEEKYYYGISNMVVRGSCSCYGHASQCLP 299
            ::::..::|              :..|:...|   |.:::|:|.:..:.|.|.|.|.||||:|: 
 Worm   241 DIKVVFSRLSPDQAELYGLSNDVNSYGNETDD---EVKQRYFYSMGELAVGGRCKCNGHASRCI- 301

  Fly   300 LDPAFSQADNEDGMVHGRCECTHNTKGMNCEECEDFFNDLPWKPAFGKKTNACKKCECNDHAVSC 364
                      .|.|....|:|.|||.|..||.|:.|..|.||..|.....|:|..|.||.||..|
 Worm   302 ----------FDKMGRYTCDCKHNTAGTECEMCKPFHYDRPWGRATANSANSCVACNCNQHAKRC 356

  Fly   365 HFDEAVFTASGFVSGGVCDNCLHNTRGQHCEECMPYFYRDPEQDITSERVCQPCDCDPQGSSDDG 429
            .||..:|..||..|||||.||.|||.|::|..|.|.|.||....:|..:.|:.|.|.|.||    
 Worm   357 RFDAELFRLSGNRSGGVCLNCRHNTAGRNCHLCKPGFVRDTSLPMTHRKACKSCGCHPVGS---- 417

  Fly   430 ICDSLNELEEGAVAGACHCKAFVTGRRCNQCKDGYWNLQSDNPEGCEPCTCNP-----LGTLNNS 489
            :..|.|:     .:|.|.||..|||..||:|..||...:|.    ..||...|     :|:.::.
 Worm   418 LGKSCNQ-----SSGQCVCKPGVTGTTCNRCAKGYQQSRST----VTPCIKIPTKADFIGSSHSE 473

  Fly   490 GCVMRTGEC-KCKKYVTGKDCNQ 511
                ...:| ||:  :..|..||
 Worm   474 ----EQDQCSKCR--IVPKRLNQ 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 54..286 CDD:459653 56/275 (20%)
EGF_Lam 287..343 CDD:238012 22/55 (40%)
Laminin_EGF 355..415 CDD:395007 29/59 (49%)
Laminin_EGF 418..475 CDD:395007 20/56 (36%)
EGF_Lam 477..526 CDD:238012 10/41 (24%)
EGF_Lam 529..567 CDD:214543
EGF_Lam 789..834 CDD:214543
Laminin_EGF 837..885 CDD:395007
Laminin_EGF 883..930 CDD:395007
Laminin_EGF 933..988 CDD:395007
Laminin_EGF 991..1035 CDD:395007
Laminin_EGF 1043..1091 CDD:395007
Laminin_EGF 1094..1142 CDD:395007
Laminin_EGF 1142..1190 CDD:395007
Mplasa_alph_rch 1228..>1771 CDD:275316
cc_DmLAMB1-like_C 1717..1786 CDD:411973
unc-6NP_509165.1 LamNT 41..289 CDD:214532 56/281 (20%)
EGF_Lam 290..333 CDD:238012 20/53 (38%)
Laminin_EGF 347..400 CDD:395007 28/52 (54%)
Laminin_EGF 410..453 CDD:395007 19/51 (37%)
NTR_netrin-1_like 490..604 CDD:239634 1/1 (100%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.