DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LanB1 and Lama2

DIOPT Version :9

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:NP_032507.2 Gene:Lama2 / 16773 MGIID:99912 Length:3118 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 63..286 CDD:278484
EGF_Lam 287..343 CDD:238012
Laminin_EGF 355..415 CDD:278482
Laminin_EGF 418..475 CDD:278482
EGF_Lam 477..526 CDD:238012
EGF_Lam 529..567 CDD:214543
EGF_Lam 789..834 CDD:214543
Laminin_EGF 837..885 CDD:278482
Laminin_EGF 883..930 CDD:278482
Laminin_EGF 933..988 CDD:278482
Laminin_EGF 991..1043 CDD:278482
Laminin_EGF 1043..1091 CDD:278482
Laminin_EGF 1094..1142 CDD:278482
Laminin_EGF 1142..1190 CDD:278482
COG6 1212..>1398 CDD:303003
TelA 1439..1782 CDD:226371
ApoLp-III_like 1545..1702 CDD:304399
Lama2NP_032507.2 Laminin_N 45..281 CDD:278484
EGF_Lam 283..330 CDD:238012
Laminin_EGF 410..467 CDD:278482
Laminin_EGF 465..511 CDD:278482
Laminin_B 579..707 CDD:278481
EGF_Lam 752..801 CDD:238012
EGF_Lam 802..859 CDD:238012
EGF_Lam 860..912 CDD:238012
EGF_Lam 913..960 CDD:238012
EGF_Lam 963..1007 CDD:214543
EGF_Lam 1009..1054 CDD:238012
Laminin_EGF 1056..1104 CDD:278482
Laminin_EGF 1102..1159 CDD:278482
LamB 1225..1360 CDD:214597
EGF_Lam <1375..1403 CDD:238012
Laminin_EGF 1416..1462 CDD:278482
Laminin_EGF 1465..1520 CDD:278482
EGF_Lam 1523..>1560 CDD:238012
Domain II and I 1570..2140
Laminin_I 1584..1848 CDD:283627
SPEC 1682..1881 CDD:295325
Apolipoprotein 1845..2059 CDD:279749
Apolipoprotein 2014..2152 CDD:279749
Laminin_II 2033..2168 CDD:283628
Laminin_G_1 2170..2310 CDD:278483
Laminin_G_1 2364..2503 CDD:278483
LamG 2524..2686 CDD:238058
Laminin_G_1 2789..2917 CDD:278483
LamG 2937..3089 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.