DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB1 and lama3

DIOPT Version :9

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:XP_005161783.1 Gene:lama3 / 101882184 ZFINID:ZDB-GENE-050208-475 Length:1711 Species:Danio rerio


Alignment Length:905 Identity:199/905 - (21%)
Similarity:311/905 - (34%) Gaps:286/905 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   962 CQEGYSGSRCEICADNFFGNPDNGGTCSKCECSNNVDLYDTGNCDRQTGACLKCLYQTTGDHCEL 1026
            |..||...|         ..|.. |.|..|.|:..     :|:||..||.||.|.:.|.|||||.
Zfish    77 CDRGYYRER---------SGPYK-GRCVPCNCNGL-----SGDCDPHTGKCLNCQFNTAGDHCER 126

  Fly  1027 CKDGFFGDALQQNCQQCECDFLGTNNTIAHCDRFTGQCPCLPNVQGVRCDQCAENHWKIASGEGC 1091
            |.:|::|.|:.:.|:.|.|.......:.|        ..||                    |.|.
Zfish   127 CMEGYYGSAILRTCRMCPCPLTDPAKSFA--------VGCL--------------------GVGD 163

  Fly  1092 ESCNCDPIGALHEQCNSYTGQCQCKPGFGGRACNQCQAHYWGNP---NEKCQPCECDQFGAADFQ 1153
            |.                  :|.||||:.|..|.:|...|:|:|   ...||||:|:.    .:.
Zfish   164 EF------------------ECLCKPGYSGVRCERCALGYYGSPLAERGSCQPCDCEH----GYV 206

  Fly  1154 CDRETGNCVCHEGIGGYKCNEC------------------ARGYIGQFPHCSPCGECFNNWDLIL 1200
            ||..||:|...:......|.:|                  || .|.|....||....:..    |
Zfish   207 CDPLTGDCYEADDPDTDNCFDCDICVVKLMDDLAAMDEEFAR-LIDQLGSFSPNATSYTG----L 266

  Fly  1201 SALEDATTATILRAKEIKQVGATGAYTSEFSELDKKLQHIRNLLQNT--------------SVSL 1251
            ..||||...|.:..::         ||....:|..|:..:.:.|||.              |.|.
Zfish   267 EKLEDAIADTKVLVQK---------YTESVFKLKPKISELESHLQNVKDDLTALNDKAIEMSCSA 322

  Fly  1252 VDIEKLDYETQSLRDQLQASHGRLSETEQNLDDIYNSLSLSGVELESLQNHSRLVQQLSKELKEN 1316
            |.:.|...:|....|.|::....|.:..|...|..|..:.:|...|......:..|::.::::..
Zfish   323 VQLLKSIDQTYQRGDNLRSESVNLLQKIQEFLDKLNRSNNTGGNTEDATRMLKEAQRMLEKMRRQ 387

  Fly  1317 GIQLQESNIEGALNLTRHAYERVSNLSTLKD-----EANELASNTDRN--CKRVENLSN----KI 1370
            ..::|...:...|   |.|:..:|.:  |||     ..:.:|::..|.  ..|.|:|.:    .|
Zfish   388 TCRVQRELVNEEL---RKAHILLSLI--LKDLIFPLNGSLIAADRIRQDLMDRAEDLRDIQEAII 447

  Fly  1371 QAEADDLANN--NKLIEDYRAELTSLTSQIPEL-NNQVCGKPGDPCDSLCGGAGCGHCGGFLSCE 1432
            .|:.|.|..|  |||.|:   :|.::......| .||                  |:....|:..
Zfish   448 DAQLDVLKANGVNKLNEE---QLKNILKHFKALRKNQ------------------GNIIANLNMA 491

  Fly  1433 HGAKTHSEEALKVAKDAETAITSKKDQADQTIRALTQAKLNASEAYEKAKRGFEQSERYLNQTNA 1497
            .|       .||.|.|.:..:...|:........:..||.|.....|..             :||
Zfish   492 RG-------TLKDASDIQEMMDELKENMTHLAALIDGAKYNLEAKLELL-------------SNA 536

  Fly  1498 NIKLAENLFIALNNFQENKTASPSESKELAQKTLDLDLKLEPEEIETLGDQINRAVSSLKNVEAI 1562
            ..|            ||....:...::||.:..:||.:.:...:..|   .:::|:.::....||
Zfish   537 TAK------------QEVVRQAEEHAQELTKLAIDLQMVIMNIKNST---AVHKAIEAINAFTAI 586

  Fly  1563 IYRTKPDLDRVNNLQSIANATKEKADKILDSANSVVESLAAADESQGKAKDAIQQANS---NIEL 1624
                   ...:|..::.|...||.||..|.....        .:.|.||||.|..||:   |.:.
Zfish   587 -------TAAINEAEAAAKLAKEAADHALKDVQK--------QDLQNKAKDLINNANALLVNAKE 636

  Fly  1625 AGQDLEKIDE--ETYSAEAPANNTAQQVEKLAKKVQKL-------QNNIMKNDRD-----AKE-- 1673
            |...||.:.:  |.|      .|..||.|...|:::::       .|||.:.|.|     |||  
Zfish   637 ASIQLEDVAQKCEAY------KNLIQQAEDKQKQLKQVMLDVLEKMNNIKRGDIDILINQAKEGA 695

  Fly  1674 ----------------ITKEAGSVKLEAMRARGEANNLQSATSATNQTLT----------DRASR 1712
                            |:::...|.:..     :..||.:.....|:|||          |:.:.
Zfish   696 AGVNATAADALTRMQNISEDLNKVNIST-----QDQNLYNLLDGVNKTLTELDQTFPSLIDKLND 755

  Fly  1713 SEN-------------ARERAKQLLQRA--------SKLTVDTNAKL-----KDLNDLQT 1746
            .||             :.||.|.|:::.        ..:....||.:     |||.|.:|
Zfish   756 VENQTEHLPGPTNLSSSIERIKVLIEQTRDAANRIRGPILFSGNAHIELRPPKDLEDFRT 815

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 63..286 CDD:278484
EGF_Lam 287..343 CDD:238012
Laminin_EGF 355..415 CDD:278482
Laminin_EGF 418..475 CDD:278482
EGF_Lam 477..526 CDD:238012
EGF_Lam 529..567 CDD:214543
EGF_Lam 789..834 CDD:214543
Laminin_EGF 837..885 CDD:278482
Laminin_EGF 883..930 CDD:278482
Laminin_EGF 933..988 CDD:278482 6/25 (24%)
Laminin_EGF 991..1043 CDD:278482 21/51 (41%)
Laminin_EGF 1043..1091 CDD:278482 6/47 (13%)
Laminin_EGF 1094..1142 CDD:278482 13/50 (26%)
Laminin_EGF 1142..1190 CDD:278482 15/65 (23%)
COG6 1212..>1398 CDD:303003 44/212 (21%)
TelA 1439..1782 CDD:226371 78/379 (21%)
ApoLp-III_like 1545..1702 CDD:304399 41/191 (21%)
lama3XP_005161783.1 EGF_Lam 95..141 CDD:238012 20/50 (40%)
Laminin_EGF 143..196 CDD:278482 19/98 (19%)
TNFRSF 167..231 CDD:328932 23/67 (34%)
Laminin_I 268..495 CDD:310534 55/268 (21%)
CwlO1 448..710 CDD:226400 71/338 (21%)
Laminin_II 691..819 CDD:283628 25/130 (19%)
LamG 793..977 CDD:238058 7/23 (30%)
LamG 1009..1149 CDD:238058
LamG 1197..1303 CDD:238058
LamG 1384..1515 CDD:238058
LamG 1540..1688 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10574
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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