DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB1 and lama1

DIOPT Version :9

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:XP_004915294.2 Gene:lama1 / 100488009 XenbaseID:XB-GENE-968308 Length:3101 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 63..286 CDD:278484
EGF_Lam 287..343 CDD:238012
Laminin_EGF 355..415 CDD:278482
Laminin_EGF 418..475 CDD:278482
EGF_Lam 477..526 CDD:238012
EGF_Lam 529..567 CDD:214543
EGF_Lam 789..834 CDD:214543
Laminin_EGF 837..885 CDD:278482
Laminin_EGF 883..930 CDD:278482
Laminin_EGF 933..988 CDD:278482
Laminin_EGF 991..1043 CDD:278482
Laminin_EGF 1043..1091 CDD:278482
Laminin_EGF 1094..1142 CDD:278482
Laminin_EGF 1142..1190 CDD:278482
COG6 1212..>1398 CDD:303003
TelA 1439..1782 CDD:226371
ApoLp-III_like 1545..1702 CDD:304399
lama1XP_004915294.2 LamNT 16..268 CDD:214532
EGF_Lam 270..317 CDD:238012
Laminin_EGF 397..454 CDD:395007
Laminin_EGF 452..498 CDD:395007
Laminin_B 566..705 CDD:395006
EGF_Lam 739..787 CDD:238012
Laminin_EGF 789..844 CDD:395007
Laminin_EGF 847..891 CDD:395007
EGF_Lam 899..947 CDD:238012
EGF_Lam 949..993 CDD:214543
EGF_Lam 995..1039 CDD:238012
Laminin_EGF 1042..1090 CDD:395007
Laminin_EGF 1088..1145 CDD:395007
Laminin_B 1216..1358 CDD:395006
Laminin_EGF 1401..1447 CDD:395007
Laminin_EGF 1450..1504 CDD:395007
Laminin_EGF 1507..>1541 CDD:395007
Laminin_I 1575..1826 CDD:310534
Smc <1705..2078 CDD:224117
Laminin_II 2035..2145 CDD:368703
LamG 2141..2281 CDD:214598
LamG 2308..2465 CDD:238058
LamG 2490..2655 CDD:238058
Laminin_G_1 2770..2898 CDD:395008
LamG 2918..3071 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 74 1.000 Domainoid score I8975
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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