DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB1 and lamb4

DIOPT Version :9

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:XP_031754867.1 Gene:lamb4 / 100485623 XenbaseID:XB-GENE-6050187 Length:1848 Species:Xenopus tropicalis


Alignment Length:1896 Identity:658/1896 - (34%)
Similarity:997/1896 - (52%) Gaps:245/1896 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 CERSSCYPATGNLLIGRENRLTASSTCGLHSPERFCILSHLQ-DKKCFLCDTREETKHDPYKN-- 110
            ||..||:|..|:||:||..:|:|||||||..|:::||:|:|: |:|||.||:|  ..:|||.|  
 Frog    40 CENRSCHPVIGDLLLGRSKQLSASSTCGLDGPQKYCIISYLEDDQKCFHCDSR--GSYDPYDNPS 102

  Fly   111 -HRIGQII------YKTKPGTNIPTWWQSENGKENATIQLDLEAEFHFTHLIITFTTFRPAAMYI 168
             |.|..:|      :|.|       |||||||.::.:::||||..|.|:||::||.||||:||.:
 Frog   103 SHLIENVITTFEPEWKNK-------WWQSENGVDHVSVRLDLETLFQFSHLVLTFKTFRPSAMLV 160

  Fly   169 ERSFDFGQTWHIYRYFAYDCKESFPGVPT-VLENITDVMCTSRYSNVEPSRNGEVIFRVLPPNIN 232
            |||.|||:||.:::|||::|..:|||:|. ..:.:.||:|.:|||::|||..|||:.:.|.|:..
 Frog   161 ERSRDFGKTWKVFKYFAHNCDTAFPGIPKGHADEVGDVICDTRYSDIEPSTEGEVVLKALDPSFL 225

  Fly   233 VTDPYAEHVQNQLKMTNLRIQMTKLHKLGDNLLDS-RLENEEKYYYGISNMVVRGSCSCYGHASQ 296
            :.|||..::|:.:.:|||||..||||.|||.:.:. :.|.||||||.|..|:|||:|.|.|||.|
 Frog   226 IEDPYDPYIQDLITITNLRINFTKLHTLGDAISNEWQDEIEEKYYYAIYEMIVRGNCFCNGHARQ 290

  Fly   297 CLPLDPAFSQADNEDGMVHGRCECTHNTKGMNCEECEDFFNDLPWKPAFGKKTNACKKCECNDHA 361
            |:||....:...:...||||||.|.|||.|:|||:|::|:||.||.||.....|||:||.||.|:
 Frog   291 CVPLQNMQADVASYPEMVHGRCVCQHNTDGVNCEKCKEFYNDTPWAPAVAFNDNACRKCNCNGHS 355

  Fly   362 VSCHFDEAVFTASGFVSGGVCDNCLHNTRGQHCEECMPYFYRDPEQDITSERVCQPCDCDPQGSS 426
            ..||||.||:.|:...|||||::|..||.|..||.|.|||||:|..|:.....|.|||||..||.
 Frog   356 EKCHFDMAVYLANNRASGGVCEDCQDNTMGNQCELCKPYFYRNPVHDVADPYACIPCDCDENGSQ 420

  Fly   427 DDGICDSLNELEEGAVAGACHCKAFVTGRRCNQCKDGYWNLQSDNPEGCEPCTCNPLGTLNNSGC 491
            .:|:|.|......|.:||||.||..|.|.||:|||.||:.|.:::|.||:.|.|||.|:|..|.|
 Frog   421 GNGLCQSQTNHRTGTLAGACLCKENVEGIRCDQCKSGYFGLSANDPLGCQYCNCNPFGSLKFSVC 485

  Fly   492 VMRTGECKCKKYVTGKDCNQCMPETYGLSESPEGCSLCNCDAGGSYDNYCDVISGQCRCRPHMTG 556
            ...||||:|:::.||:.|.:|:|..:||..|...|:.||||.||:..:.|...:|||.|||:|.|
 Frog   486 DTVTGECQCQQFATGRYCEECIPGYWGLGNSLHSCTPCNCDIGGARSDLCSQSNGQCDCRPNMNG 550

  Fly   557 RSCSQPKQNYF-IPLLPEVHEAE------------------------------------------ 578
            |.|:|||..|: |||....:|||                                          
 Frog   551 RHCNQPKPGYYIIPLDYYFYEAENALLLAKPENIVSSTPIPKCKDYFEKQGIDFRFENGRIILTN 615

  Fly   579 ----------VVDECISYGANGNCSLVAETP----DGSFTGIGFTRVPENSELVFTVGDIPRSMP 629
                      .:.|...:..||...:|...|    |.::||.||.||...:.|.|||.:||..|.
 Frog   616 MTKQSLTERTYIKEIFPFSTNGFAEVVLRQPTPRSDITWTGPGFARVLNGAGLRFTVNNIPYPME 680

  Fly   630 YDAVIRYQSTSRGDWENAFITLVRPDQVDPEGGCGELAAATSS-ETRIPFSLPDRSRQVVALNEV 693
            :...|||:.....||....:.      ..|:|...|....:.. :.|....|...||..:....|
 Frog   681 FVIAIRYEPEILEDWTARIVV------NSPKGEASEHCRNSKPLDGRDSLLLSATSRLALLNTSV 739

  Fly   694 CLEAGKVYKFRIYFERKRHDVDSPTATILVDSLTLIPRIDVTPIFQGSVLADIRK-------KDY 751
            ||.....|...:|..::.:. || .:.||:|||.|||:|:           .|:|       .:|
 Frog   740 CLTPETEYSVDVYLTQESNS-DS-NSYILIDSLGLIPQIN-----------SIKKLCNQAELDEY 791

  Fly   752 EKYNCKSSLYDMNYKSDPK-CQNLDNILSVFVHDGASMCNCNPTGSLSKVCESNGGYCQCKPNVV 815
            :||||.....::..:..|. |:.|...:|..:|:||..|:||..||||.:|...||:|.|||||.
 Frog   792 DKYNCIEMASEIGTEILPNVCERLIVSMSARIHNGAVKCSCNIDGSLSPICSKFGGHCNCKPNVA 856

  Fly   816 GRQCDQCAPGTYGFGPEGCKACDCNSIGSKDKYCDLITGQCQCVPNTYGRECNQCQPGYWNFPEC 880
            ||.||:||.|::||..:|||.|:|::.||....||.:||||.|....:||:|:.|.|||:.||.|
 Frog   857 GRCCDRCAVGSFGFDSDGCKECNCDTKGSVSPLCDQVTGQCVCRGEIHGRQCDSCLPGYYGFPNC 921

  Fly   881 RVCQCNGHAATCDPIQGTCIDCQDSTTGYSCDSCLDGYYGNPLFGSEIGCRPCRCPETVASGLAH 945
            :.|||||::..||.:.|.|:||:..|.|.:|:.|.:.|||||:.|.  .||||.||::..|....
 Frog   922 QPCQCNGNSEICDLVTGACLDCKGFTNGTNCERCQNNYYGNPVLGQ--SCRPCMCPDSPNSNRYF 984

  Fly   946 ADGCSLDTRNNNMLCHCQEGYSGSRCEICADNFFGNPDN-GGTCSKCECSNNVDLYDTGNCDRQT 1009
            |..|..|..:..|:|.|..||:|:.||.|...|:||.:. ||.|..|:|:||:|:.:..:||:.|
 Frog   985 AHSCHQDPDSAEMVCSCLSGYTGNNCEACPPGFYGNMEEFGGRCLPCQCNNNIDVTNPESCDKVT 1049

  Fly  1010 GACLKCLYQTTGDHCELCKDGFFGDALQQNCQQCECDFLGTN--NTIAH-------CDRFTGQCP 1065
            |.||:|||.|.|.:||.|..|:||..|.|||::|.|:.:|||  |...:       |::.|||||
 Frog  1050 GECLECLYNTYGANCESCLPGYFGSPLLQNCRKCICNPVGTNVENCSVYEEIGECVCNKTTGQCP 1114

  Fly  1066 CLPNVQGVRCDQCAENHWKIASGEGCESCNCDPIGALHEQCNSYTGQCQCKPGFGGRACNQCQAH 1130
            |||||.|..||:||..:|.:::|.||:.|:|....:...|||.:||||.|||...|:.||:|:.:
 Frog  1115 CLPNVIGTNCDKCASGYWGMSNGNGCQPCDCYLNNSFGIQCNQFTGQCLCKPKHTGKKCNECEEN 1179

  Fly  1131 YWGNPNEKCQPCECDQFGAADFQCDRETGNCVCHEGIGGYKCNECARGYIGQFPHCSPCGECFNN 1195
            ::|:...:|.||:|:..|.....||:.||:|:|..|:.|..|::||..:..|||.|..|..||..
 Frog  1180 HFGDAKYQCLPCKCNLEGTIRPMCDKVTGSCICRPGVTGRYCDQCAPKFQQQFPECPQCHMCFEP 1244

  Fly  1196 WDLILSALEDATTATILRAKEI-----KQVGATGAYTSEFSELDKKLQHIRNLLQNTSVSLVDIE 1255
            ||..:::|.:|....|..|..|     .|:|.    ..:.|.|..||..|.|..::..:|.....
 Frog  1245 WDSEVTSLSEAIHGLIRLAANIGPKRPSQLGC----DIQMSILQNKLSIIENAFKSPIISPQKYS 1305

  Fly  1256 KLDYETQSLRDQLQ----------ASHGRLSET----EQNLDDIYNSLSLSGVELESLQNHSRLV 1306
            ::.....::|.:::          :...||::|    |:.::|::.       |||.:       
 Frog  1306 QVKSYYDTIRQKVRKVLISDVEPFSKIPRLNKTISIVEKEVNDLFK-------ELERI------- 1356

  Fly  1307 QQLSKELKENGIQLQESNIEGALNLTRHAYERVSNLSTLKDEANELASNTDRNCKRVENLSNKIQ 1371
                |::||.     |:.|:..:.:.  |::::|...:....|.|...|..|..:.|......|.
 Frog  1357 ----KKIKEG-----ETTIKRKVFIA--AFDKISEHYSTSVLAGEKLRNATRTTQAVTKTRKHIL 1410

  Fly  1372 AEADDLANNNKLIEDYRAELTSLTSQIPELNNQVCGKPGD-PCD-SLCGGAGC------GHCGGF 1428
            ...|:....:|...:...::.||  .|.::|..|||...| ||| :.||||.|      ..||| 
 Frog  1411 TILDNQEAKHKQNAEMLKKMKSL--DISKMNEMVCGAVWDFPCDIAPCGGALCRDKSGKRKCGG- 1472

  Fly  1429 LSCEHGAKTHSEEALKVAKDAETAITS------KKDQADQTIRALTQ-AKLNASEAYEKAKRGFE 1486
            .:| :||...:::|||.|.|.:..:.:      :.::...:||.|.: .|:.||:..:|..:.  
 Frog  1473 PNC-NGALPLAKDALKTANDTDLKLRNLSVHFLEAEKQINSIRYLAEDTKMKASQLDKKLSKA-- 1534

  Fly  1487 QSERYLNQTNANIKLAENLFIALNNF-----------------------QE-NKTASPSESKELA 1527
                 :|:..|:...|:.|...:.:|                       || :.|.||.:.:.:.
 Frog  1535 -----MNRLEADKMRAKELIKNVKDFLLDSIPVYPCHRSLQGGSIPKTPQEVDATISPEDIENVV 1594

  Fly  1528 QKTLDLDLKLEPEEIETLGDQINRAVSSL-KNVEAIIYRTKPDLDRVNNLQSIANATKEKADKIL 1591
            .:.|.:.|...|.::..:..:|.:...|. :|.:::    :..|:.|..|...|...:..|: .|
 Frog  1595 NQILAIKLPAAPYDLIDMLSKIKKYCDSYQENKKSL----QNQLEEVTKLNQRAKEARNLAE-TL 1654

  Fly  1592 DSANSVVESLAAADESQGKAKDAIQQANSNIELAGQDLEKIDEETYSAEAPANNTAQQVE----- 1651
            .:.:.:..:|..|::||.|....::..|:       ||:.|..:...|::.|:.|..::|     
 Frog  1655 PNTDEIWNTLKMAEDSQKKTSSVLKSINN-------DLQDIRNKLLEAKSQADLTEDRMEVINDL 1712

  Fly  1652 --KLAKKVQKLQNNIMKNDRDAKEITKEAGSVKLEAMRARGEANNLQSATSATNQTLTDRASRSE 1714
              :|..|:.:||:.::||...|.:...||.:...||:.:....|||:...:...:.|..:....|
 Frog  1713 YTQLETKIAELQDKMLKNRNSAAKAENEAKAALQEAIESEKNLNNLKQKYAFLKEKLKKKEIPPE 1777

  Fly  1715 NARERAKQLLQRASKLTVDTNAKLKDLNDLQTVY--LNKNQQLLRLQAEIGPLNK--ELNEHLIH 1775
             ..||.:||.::|..|:.:.:.|.:.::||:...  |||..|....|.: |..|:  :|...::|
 Frog  1778 -ILERLQQLKKQAEDLSKEIDNKFQSISDLEQKIDELNKTNQEKANQLK-GLENQAIKLKNDIVH 1840

  Fly  1776 IKERGSHYRQC 1786
            ::   :.|..|
 Frog  1841 VE---TTYSTC 1848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 63..286 CDD:278484 110/234 (47%)
EGF_Lam 287..343 CDD:238012 29/55 (53%)
Laminin_EGF 355..415 CDD:278482 30/59 (51%)
Laminin_EGF 418..475 CDD:278482 27/56 (48%)
EGF_Lam 477..526 CDD:238012 21/48 (44%)
EGF_Lam 529..567 CDD:214543 20/37 (54%)
EGF_Lam 789..834 CDD:214543 25/44 (57%)
Laminin_EGF 837..885 CDD:278482 22/47 (47%)
Laminin_EGF 883..930 CDD:278482 21/46 (46%)
Laminin_EGF 933..988 CDD:278482 21/55 (38%)
Laminin_EGF 991..1043 CDD:278482 26/51 (51%)
Laminin_EGF 1043..1091 CDD:278482 24/56 (43%)
Laminin_EGF 1094..1142 CDD:278482 18/47 (38%)
Laminin_EGF 1142..1190 CDD:278482 18/47 (38%)
COG6 1212..>1398 CDD:303003 37/204 (18%)
TelA 1439..1782 CDD:226371 81/385 (21%)
ApoLp-III_like 1545..1702 CDD:304399 36/164 (22%)
lamb4XP_031754867.1 Laminin_N 46..280 CDD:395009 114/242 (47%)
EGF_Lam 282..337 CDD:238012 29/54 (54%)
Laminin_EGF 349..399 CDD:395007 28/49 (57%)
Laminin_EGF 412..469 CDD:395007 27/56 (48%)
EGF_Lam 472..521 CDD:238012 21/48 (44%)
EGF_Lam 522..565 CDD:238012 22/42 (52%)
EGF_Lam 830..875 CDD:214543 25/44 (57%)
Laminin_EGF 878..926 CDD:395007 22/47 (47%)
EGF_Lam 923..970 CDD:238012 21/48 (44%)
Laminin_EGF <993..1028 CDD:395007 14/34 (41%)
Laminin_EGF 1031..1075 CDD:395007 22/43 (51%)
Laminin_EGF 1083..1140 CDD:395007 24/56 (43%)
EGF_Lam 1143..1188 CDD:214543 17/44 (39%)
EGF_Lam 1190..1239 CDD:238012 19/48 (40%)
SMC_prok_A <1279..1384 CDD:274009 23/129 (18%)
Mplasa_alph_rch 1483..>1838 CDD:275316 80/375 (21%)
cc_LAMB4_C 1779..1848 CDD:411972 19/72 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 303 1.000 Domainoid score I1381
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D42471at33208
OrthoFinder 1 1.000 - - FOG0002726
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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