DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB1 and lamb4

DIOPT Version :10

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:XP_031754867.1 Gene:lamb4 / 100485623 XenbaseID:XB-GENE-6050187 Length:1848 Species:Xenopus tropicalis


Alignment Length:1896 Identity:658/1896 - (34%)
Similarity:997/1896 - (52%) Gaps:245/1896 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 CERSSCYPATGNLLIGRENRLTASSTCGLHSPERFCILSHLQ-DKKCFLCDTREETKHDPYKN-- 110
            ||..||:|..|:||:||..:|:|||||||..|:::||:|:|: |:|||.||:|  ..:|||.|  
 Frog    40 CENRSCHPVIGDLLLGRSKQLSASSTCGLDGPQKYCIISYLEDDQKCFHCDSR--GSYDPYDNPS 102

  Fly   111 -HRIGQII------YKTKPGTNIPTWWQSENGKENATIQLDLEAEFHFTHLIITFTTFRPAAMYI 168
             |.|..:|      :|.|       |||||||.::.:::||||..|.|:||::||.||||:||.:
 Frog   103 SHLIENVITTFEPEWKNK-------WWQSENGVDHVSVRLDLETLFQFSHLVLTFKTFRPSAMLV 160

  Fly   169 ERSFDFGQTWHIYRYFAYDCKESFPGVPT-VLENITDVMCTSRYSNVEPSRNGEVIFRVLPPNIN 232
            |||.|||:||.:::|||::|..:|||:|. ..:.:.||:|.:|||::|||..|||:.:.|.|:..
 Frog   161 ERSRDFGKTWKVFKYFAHNCDTAFPGIPKGHADEVGDVICDTRYSDIEPSTEGEVVLKALDPSFL 225

  Fly   233 VTDPYAEHVQNQLKMTNLRIQMTKLHKLGDNLLDS-RLENEEKYYYGISNMVVRGSCSCYGHASQ 296
            :.|||..::|:.:.:|||||..||||.|||.:.:. :.|.||||||.|..|:|||:|.|.|||.|
 Frog   226 IEDPYDPYIQDLITITNLRINFTKLHTLGDAISNEWQDEIEEKYYYAIYEMIVRGNCFCNGHARQ 290

  Fly   297 CLPLDPAFSQADNEDGMVHGRCECTHNTKGMNCEECEDFFNDLPWKPAFGKKTNACKKCECNDHA 361
            |:||....:...:...||||||.|.|||.|:|||:|::|:||.||.||.....|||:||.||.|:
 Frog   291 CVPLQNMQADVASYPEMVHGRCVCQHNTDGVNCEKCKEFYNDTPWAPAVAFNDNACRKCNCNGHS 355

  Fly   362 VSCHFDEAVFTASGFVSGGVCDNCLHNTRGQHCEECMPYFYRDPEQDITSERVCQPCDCDPQGSS 426
            ..||||.||:.|:...|||||::|..||.|..||.|.|||||:|..|:.....|.|||||..||.
 Frog   356 EKCHFDMAVYLANNRASGGVCEDCQDNTMGNQCELCKPYFYRNPVHDVADPYACIPCDCDENGSQ 420

  Fly   427 DDGICDSLNELEEGAVAGACHCKAFVTGRRCNQCKDGYWNLQSDNPEGCEPCTCNPLGTLNNSGC 491
            .:|:|.|......|.:||||.||..|.|.||:|||.||:.|.:::|.||:.|.|||.|:|..|.|
 Frog   421 GNGLCQSQTNHRTGTLAGACLCKENVEGIRCDQCKSGYFGLSANDPLGCQYCNCNPFGSLKFSVC 485

  Fly   492 VMRTGECKCKKYVTGKDCNQCMPETYGLSESPEGCSLCNCDAGGSYDNYCDVISGQCRCRPHMTG 556
            ...||||:|:::.||:.|.:|:|..:||..|...|:.||||.||:..:.|...:|||.|||:|.|
 Frog   486 DTVTGECQCQQFATGRYCEECIPGYWGLGNSLHSCTPCNCDIGGARSDLCSQSNGQCDCRPNMNG 550

  Fly   557 RSCSQPKQNYF-IPLLPEVHEAE------------------------------------------ 578
            |.|:|||..|: |||....:|||                                          
 Frog   551 RHCNQPKPGYYIIPLDYYFYEAENALLLAKPENIVSSTPIPKCKDYFEKQGIDFRFENGRIILTN 615

  Fly   579 ----------VVDECISYGANGNCSLVAETP----DGSFTGIGFTRVPENSELVFTVGDIPRSMP 629
                      .:.|...:..||...:|...|    |.::||.||.||...:.|.|||.:||..|.
 Frog   616 MTKQSLTERTYIKEIFPFSTNGFAEVVLRQPTPRSDITWTGPGFARVLNGAGLRFTVNNIPYPME 680

  Fly   630 YDAVIRYQSTSRGDWENAFITLVRPDQVDPEGGCGELAAATSS-ETRIPFSLPDRSRQVVALNEV 693
            :...|||:.....||....:.      ..|:|...|....:.. :.|....|...||..:....|
 Frog   681 FVIAIRYEPEILEDWTARIVV------NSPKGEASEHCRNSKPLDGRDSLLLSATSRLALLNTSV 739

  Fly   694 CLEAGKVYKFRIYFERKRHDVDSPTATILVDSLTLIPRIDVTPIFQGSVLADIRK-------KDY 751
            ||.....|...:|..::.:. || .:.||:|||.|||:|:           .|:|       .:|
 Frog   740 CLTPETEYSVDVYLTQESNS-DS-NSYILIDSLGLIPQIN-----------SIKKLCNQAELDEY 791

  Fly   752 EKYNCKSSLYDMNYKSDPK-CQNLDNILSVFVHDGASMCNCNPTGSLSKVCESNGGYCQCKPNVV 815
            :||||.....::..:..|. |:.|...:|..:|:||..|:||..||||.:|...||:|.|||||.
 Frog   792 DKYNCIEMASEIGTEILPNVCERLIVSMSARIHNGAVKCSCNIDGSLSPICSKFGGHCNCKPNVA 856

  Fly   816 GRQCDQCAPGTYGFGPEGCKACDCNSIGSKDKYCDLITGQCQCVPNTYGRECNQCQPGYWNFPEC 880
            ||.||:||.|::||..:|||.|:|::.||....||.:||||.|....:||:|:.|.|||:.||.|
 Frog   857 GRCCDRCAVGSFGFDSDGCKECNCDTKGSVSPLCDQVTGQCVCRGEIHGRQCDSCLPGYYGFPNC 921

  Fly   881 RVCQCNGHAATCDPIQGTCIDCQDSTTGYSCDSCLDGYYGNPLFGSEIGCRPCRCPETVASGLAH 945
            :.|||||::..||.:.|.|:||:..|.|.:|:.|.:.|||||:.|.  .||||.||::..|....
 Frog   922 QPCQCNGNSEICDLVTGACLDCKGFTNGTNCERCQNNYYGNPVLGQ--SCRPCMCPDSPNSNRYF 984

  Fly   946 ADGCSLDTRNNNMLCHCQEGYSGSRCEICADNFFGNPDN-GGTCSKCECSNNVDLYDTGNCDRQT 1009
            |..|..|..:..|:|.|..||:|:.||.|...|:||.:. ||.|..|:|:||:|:.:..:||:.|
 Frog   985 AHSCHQDPDSAEMVCSCLSGYTGNNCEACPPGFYGNMEEFGGRCLPCQCNNNIDVTNPESCDKVT 1049

  Fly  1010 GACLKCLYQTTGDHCELCKDGFFGDALQQNCQQCECDFLGTN--NTIAH-------CDRFTGQCP 1065
            |.||:|||.|.|.:||.|..|:||..|.|||::|.|:.:|||  |...:       |::.|||||
 Frog  1050 GECLECLYNTYGANCESCLPGYFGSPLLQNCRKCICNPVGTNVENCSVYEEIGECVCNKTTGQCP 1114

  Fly  1066 CLPNVQGVRCDQCAENHWKIASGEGCESCNCDPIGALHEQCNSYTGQCQCKPGFGGRACNQCQAH 1130
            |||||.|..||:||..:|.:::|.||:.|:|....:...|||.:||||.|||...|:.||:|:.:
 Frog  1115 CLPNVIGTNCDKCASGYWGMSNGNGCQPCDCYLNNSFGIQCNQFTGQCLCKPKHTGKKCNECEEN 1179

  Fly  1131 YWGNPNEKCQPCECDQFGAADFQCDRETGNCVCHEGIGGYKCNECARGYIGQFPHCSPCGECFNN 1195
            ::|:...:|.||:|:..|.....||:.||:|:|..|:.|..|::||..:..|||.|..|..||..
 Frog  1180 HFGDAKYQCLPCKCNLEGTIRPMCDKVTGSCICRPGVTGRYCDQCAPKFQQQFPECPQCHMCFEP 1244

  Fly  1196 WDLILSALEDATTATILRAKEI-----KQVGATGAYTSEFSELDKKLQHIRNLLQNTSVSLVDIE 1255
            ||..:::|.:|....|..|..|     .|:|.    ..:.|.|..||..|.|..::..:|.....
 Frog  1245 WDSEVTSLSEAIHGLIRLAANIGPKRPSQLGC----DIQMSILQNKLSIIENAFKSPIISPQKYS 1305

  Fly  1256 KLDYETQSLRDQLQ----------ASHGRLSET----EQNLDDIYNSLSLSGVELESLQNHSRLV 1306
            ::.....::|.:::          :...||::|    |:.::|::.       |||.:       
 Frog  1306 QVKSYYDTIRQKVRKVLISDVEPFSKIPRLNKTISIVEKEVNDLFK-------ELERI------- 1356

  Fly  1307 QQLSKELKENGIQLQESNIEGALNLTRHAYERVSNLSTLKDEANELASNTDRNCKRVENLSNKIQ 1371
                |::||.     |:.|:..:.:.  |::::|...:....|.|...|..|..:.|......|.
 Frog  1357 ----KKIKEG-----ETTIKRKVFIA--AFDKISEHYSTSVLAGEKLRNATRTTQAVTKTRKHIL 1410

  Fly  1372 AEADDLANNNKLIEDYRAELTSLTSQIPELNNQVCGKPGD-PCD-SLCGGAGC------GHCGGF 1428
            ...|:....:|...:...::.||  .|.::|..|||...| ||| :.||||.|      ..||| 
 Frog  1411 TILDNQEAKHKQNAEMLKKMKSL--DISKMNEMVCGAVWDFPCDIAPCGGALCRDKSGKRKCGG- 1472

  Fly  1429 LSCEHGAKTHSEEALKVAKDAETAITS------KKDQADQTIRALTQ-AKLNASEAYEKAKRGFE 1486
            .:| :||...:::|||.|.|.:..:.:      :.::...:||.|.: .|:.||:..:|..:.  
 Frog  1473 PNC-NGALPLAKDALKTANDTDLKLRNLSVHFLEAEKQINSIRYLAEDTKMKASQLDKKLSKA-- 1534

  Fly  1487 QSERYLNQTNANIKLAENLFIALNNF-----------------------QE-NKTASPSESKELA 1527
                 :|:..|:...|:.|...:.:|                       || :.|.||.:.:.:.
 Frog  1535 -----MNRLEADKMRAKELIKNVKDFLLDSIPVYPCHRSLQGGSIPKTPQEVDATISPEDIENVV 1594

  Fly  1528 QKTLDLDLKLEPEEIETLGDQINRAVSSL-KNVEAIIYRTKPDLDRVNNLQSIANATKEKADKIL 1591
            .:.|.:.|...|.::..:..:|.:...|. :|.:::    :..|:.|..|...|...:..|: .|
 Frog  1595 NQILAIKLPAAPYDLIDMLSKIKKYCDSYQENKKSL----QNQLEEVTKLNQRAKEARNLAE-TL 1654

  Fly  1592 DSANSVVESLAAADESQGKAKDAIQQANSNIELAGQDLEKIDEETYSAEAPANNTAQQVE----- 1651
            .:.:.:..:|..|::||.|....::..|:       ||:.|..:...|::.|:.|..::|     
 Frog  1655 PNTDEIWNTLKMAEDSQKKTSSVLKSINN-------DLQDIRNKLLEAKSQADLTEDRMEVINDL 1712

  Fly  1652 --KLAKKVQKLQNNIMKNDRDAKEITKEAGSVKLEAMRARGEANNLQSATSATNQTLTDRASRSE 1714
              :|..|:.:||:.::||...|.:...||.:...||:.:....|||:...:...:.|..:....|
 Frog  1713 YTQLETKIAELQDKMLKNRNSAAKAENEAKAALQEAIESEKNLNNLKQKYAFLKEKLKKKEIPPE 1777

  Fly  1715 NARERAKQLLQRASKLTVDTNAKLKDLNDLQTVY--LNKNQQLLRLQAEIGPLNK--ELNEHLIH 1775
             ..||.:||.::|..|:.:.:.|.:.::||:...  |||..|....|.: |..|:  :|...::|
 Frog  1778 -ILERLQQLKKQAEDLSKEIDNKFQSISDLEQKIDELNKTNQEKANQLK-GLENQAIKLKNDIVH 1840

  Fly  1776 IKERGSHYRQC 1786
            ::   :.|..|
 Frog  1841 VE---TTYSTC 1848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 54..286 CDD:459653 115/243 (47%)
EGF_Lam 287..343 CDD:238012 29/55 (53%)
Laminin_EGF 355..415 CDD:395007 30/59 (51%)
Laminin_EGF 418..475 CDD:395007 27/56 (48%)
EGF_Lam 477..526 CDD:238012 21/48 (44%)
EGF_Lam 529..567 CDD:214543 20/37 (54%)
EGF_Lam 789..834 CDD:214543 25/44 (57%)
Laminin_EGF 837..885 CDD:395007 22/47 (47%)
Laminin_EGF 883..930 CDD:395007 21/46 (46%)
Laminin_EGF 933..988 CDD:395007 21/55 (38%)
Laminin_EGF 991..1035 CDD:395007 22/43 (51%)
Laminin_EGF 1043..1091 CDD:395007 24/56 (43%)
Laminin_EGF 1094..1142 CDD:395007 18/47 (38%)
Laminin_EGF 1142..1190 CDD:395007 18/47 (38%)
Mplasa_alph_rch 1228..>1771 CDD:275316 133/607 (22%)
cc_DmLAMB1-like_C 1717..1786 CDD:411973 19/72 (26%)
lamb4XP_031754867.1 Laminin_N 45..280 CDD:459653 115/243 (47%)
EGF_Lam 282..337 CDD:238012 29/54 (54%)
Laminin_EGF 349..399 CDD:395007 28/49 (57%)
Laminin_EGF 412..469 CDD:395007 27/56 (48%)
EGF_Lam 472..521 CDD:238012 21/48 (44%)
EGF_Lam 522..565 CDD:238012 22/42 (52%)
EGF_Lam 830..875 CDD:214543 25/44 (57%)
Laminin_EGF 878..926 CDD:395007 22/47 (47%)
EGF_Lam 923..970 CDD:238012 21/48 (44%)
Laminin_EGF <993..1028 CDD:395007 14/34 (41%)
Laminin_EGF 1031..1075 CDD:395007 22/43 (51%)
Laminin_EGF 1083..1140 CDD:395007 24/56 (43%)
EGF_Lam 1143..1188 CDD:214543 17/44 (39%)
EGF_Lam 1190..1239 CDD:238012 19/48 (40%)
SMC_N <1279..1384 CDD:481474 23/129 (18%)
Mplasa_alph_rch 1483..>1838 CDD:275316 80/375 (21%)
cc_LAMB4_C 1779..1848 CDD:411972 19/72 (26%)

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