DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LanB1 and lamb3

DIOPT Version :9

Sequence 1:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster
Sequence 2:XP_012826649.2 Gene:lamb3 / 100125073 XenbaseID:XB-GENE-983491 Length:1157 Species:Xenopus tropicalis


Alignment Length:1767 Identity:400/1767 - (22%)
Similarity:599/1767 - (33%) Gaps:659/1767 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 CERSSCYPATGNLLIGRENRLTASSTCGLHSPERFCILSHLQDKKCFLCDTREETKHDPYK--NH 111
            |.|.:||||.|:|||||.|.|.||||||:..||.:|........||..||:|:     |:.  :|
 Frog    20 CSRGACYPAAGDLLIGRGNYLRASSTCGIEKPETYCSPYGEMQMKCCRCDSRQ-----PFTEISH 79

  Fly   112 RIGQIIYKTKPGTNI--PT----WWQSENGKENATIQLDLEAEFHFTHLIITFTTFRPAAMYIER 170
            ||          ||:  ||    ||||.||..:.::|.||..:|..:.:|:.|.:.|||:|.|||
 Frog    80 RI----------TNVLSPTGHLRWWQSSNGINDVSLQFDLNKKFQLSDVILDFRSPRPASMLIER 134

  Fly   171 SFDFGQTWHIYRYFAYDCKESFP----GVPTVLENITDVMCTSRYSNVEPSRNGEVIFRVLPPNI 231
            |.|.|:||.:|:|.||||..|||    |||..|:   ||.|...:.  :|::.|::.|..:....
 Frog   135 SSDHGKTWQVYQYLAYDCAASFPHIRRGVPYDLQ---DVRCQELHG--DPTQGGKIRFSPMELAF 194

  Fly   232 NVTDPYAEHVQNQLKMTNLRIQMTKLHKLGDNLLDSRLENEEKYYYGISNMVVRGSCSCYGHASQ 296
            :|...:::.||:....||||:..|:|.:     |..|...|...:|.:..|.|.|||.|||||.:
 Frog   195 SVPLSHSQRVQHLADFTNLRLNFTQLVR-----LPPRRYREPSTFYSVDVMRVHGSCFCYGHADR 254

  Fly   297 CLPLDPAFSQADNEDGMVHGRCECTHNTKGMNCEECEDFFNDLPWKPAFGKKTNACKKCECNDHA 361
            |:| ..|..:....|..|:.:|.|.|||.|.|||.|.|.|:||||:||.....|.|::|.||:||
 Frog   255 CMP-SGALDRDHYGDIQVYDKCICQHNTVGENCERCADLFHDLPWRPADDNYPNECRRCNCNNHA 318

  Fly   362 VSCHFDEAVFTASGFVSGGVCDNCLHNTRGQHCEECMPYFYRDPEQDITSERVCQPCDCDPQGSS 426
            ..||||.||:.|||.|||||||||...|.|::||.|...:||:|.:|::....|..|||||:||.
 Frog   319 DKCHFDPAVYEASGRVSGGVCDNCRDGTTGRNCERCRSDYYRNPNKDMSHRDACISCDCDPEGSI 383

  Fly   427 DDGICDSLNELEEGAVAGACHCKAFVTGRRCNQCKDGYWNLQSDNPEGCEPCTCNPLGTLNNSGC 491
            |.|.||.|        .|.|:||..|.|.||:|||.||:.|.:.||:||..|||||.|       
 Frog   384 DGGSCDDL--------TGRCNCKENVGGERCDQCKPGYYLLSASNPQGCTKCTCNPQG------- 433

  Fly   492 VMRTGECKCKKYVTGKDCNQCMPETYGLSESPEGCSLCNCDAGGSYDNYCDVISGQCRCRPHMTG 556
                                                                             
 Frog   434 ----------------------------------------------------------------- 433

  Fly   557 RSCSQPKQNYFIPLLPEVHEAEVVDECISYGANGNCSLVAETPDGSFTGIGFTRVPENSELVFTV 621
                                                                             
 Frog   434 ----------------------------------------------------------------- 433

  Fly   622 GDIPRSMPYDAVIRYQSTSRGDWENAFITLVRPDQVDPEGGCGELAAATSSETRIPFSLPDRSRQ 686
                                                                             
 Frog   434 ----------------------------------------------------------------- 433

  Fly   687 VVALNEVCLEAGKVYKFRIYFERKRHDVDSPTATILVDSLTLIPRIDVTPIFQGSVLADIRKKDY 751
                                .||     |.|                                  
 Frog   434 --------------------MER-----DQP---------------------------------- 439

  Fly   752 EKYNCKSSLYDMNYKSDPKCQNLDNILSVFVHDGASMCNCNPTGSLSKVCESNGGYCQCKPNVVG 816
                                                                             
 Frog   440 ----------------------------------------------------------------- 439

  Fly   817 RQCDQCAPGTYGFGPEGCKACDCNSIGSKDKYCDLITGQCQCVPNTYGRECNQCQPGYWNFPECR 881
                                                                             
 Frog   440 ----------------------------------------------------------------- 439

  Fly   882 VCQCNGHAATCDPIQGTCIDCQDSTTGYSCDSCLDGYYGNPLFGSEIGCRPCRCPETVASGLAHA 946
                                                                             
 Frog   440 ----------------------------------------------------------------- 439

  Fly   947 DGCSLDTRNNNMLCHCQEGYSGSRCEICADNFFGNPDNGGTCSKCECSNNVDLYDTGNCDRQTGA 1011
                                                                             
 Frog   440 ----------------------------------------------------------------- 439

  Fly  1012 CLKCLYQTTGDHCELCKDGFFGDALQQNCQQCECDFLGTNNTIAHCDRFTGQCPCLPNVQGVRCD 1076
                                                         ||..||||.|||||.|.|||
 Frog   440 ---------------------------------------------CDSETGQCKCLPNVLGQRCD 459

  Fly  1077 QCAENHWKIASGEGCESCNCDPIGALHEQCNSYTGQCQCKPGFGGRACNQCQAHYWGNPNEKCQP 1141
            |||.|||.:|||.|||.|.|.|..:...|||..||||.|:.|||||.|.:|....:|:....|:.
 Frog   460 QCATNHWNLASGRGCERCGCHPRNSYSLQCNQATGQCLCREGFGGRFCTECPDRMYGSLQTGCRA 524

  Fly  1142 CECDQFGAADFQCDRETGNCVCHEGIGGYKCNECARGYIGQFPHCSPCGECFNNWDLILSALEDA 1206
            |.||..|..:..||:..|.|:|..||.|.:|:.|.|||...||.|..|.:||:.:|..::||...
 Frog   525 CNCDFQGTLEQGCDKANGRCLCRPGITGVRCDSCQRGYSDPFPTCRACHQCFHFYDHEINALRSH 589

  Fly  1207 TTATILRAKEIKQVGATGAYTSEFSELDKKLQHIRNLLQNTSVSLVDIEKLDYETQSLRDQLQAS 1271
            |.:.:.......|....| .....:.::..||.::.:...|.:...::.:.:.:...:|...|..
 Frog   590 TQSLLNMTTGQGQDSDLG-LGPRMAAVEAALQRVQRISTGTPIPDNELSRAESKLSRMRGDAQQL 653

  Fly  1272 HGRLSETEQNLDDIYNSLSLSGVELESLQNHSRLVQQLSKELKENGIQLQESNIEGALNLTRHAY 1336
            :..|.|.|.     :..||.:...|....|...|:.|..||...:.|....|.|..|:|   .||
 Frog   654 NTNLPEPES-----FAPLSNNIHSLRGQFNRINLLYQSKKEQHSSSISNDASGIFMAVN---SAY 710

  Fly  1337 ERVSNLSTLKD-EANELASNTDRNCKRV----ENLSNKIQAEADDLANNNKLIEDYRAELT--SL 1394
            :  |:|.:.|. .|.|...:..::.:||    |..|.::.|:          :|..:.||:  :|
 Frog   711 Q--SSLESAKSIAAAEGVLSQSKDSRRVALGLEGKSTELLAD----------LETLKEELSYPNL 763

  Fly  1395 TSQIPELNNQVC-GKPGDPC-DSLCGGAGCGHCGGFLSCE-----HGAKTHSEEALKVAKDAETA 1452
            |..|    |::| |...||| ...|.|..|......| |:     .||...|..||:..:.....
 Frog   764 TPTI----NRICEGVRIDPCTPEECPGPVCQRNNNSL-CKVGSLCRGAFPLSSNALRNTEKTSQD 823

  Fly  1453 ITSKKDQADQTIRALTQAKLNASEAYEKAKRGFEQSERYLNQTNANIKLAENLFIALNNFQENKT 1517
            :....::..:....:..|:..||:..:.||:..||..|..::...::..:......:.:|....:
 Frog   824 LQDINNKLQKNALMIQDAEKTASQIQDNAKQLTEQVSRARSRMEEDMGHSRQFIQQVRDFLTEPS 888

  Fly  1518 ASPSESKELAQKTLDLDLKLEPEEIETLGDQINRAVSSLKNVEAIIYRTKPDLDRVNNLQSIANA 1582
            ..|:..:|:::..|.|.|..:...|....::|......|.|:::::.:||.|:.:...|||.|..
 Frog   889 TDPATIQEVSEYILSLKLPTDASSILRKMNEIRSIAGKLPNIDSVLSQTKDDIAKAKKLQSEAEL 953

  Fly  1583 TKEKADKILDSANSVVESLAAADESQGKAKDAIQQANSNIELAGQDLEKIDEETYSAEAPANNTA 1647
            .:.||..:.|..:.|:.:|:.|..:..:|:|.|:.::|:::.....:.:|:|....||....:..
 Frog   954 ARNKAKDVEDGVDGVIMNLSQAKTALQEAEDKIRGSSSSLQQIQNRMHEIEEVLSPAERGLTDMH 1018

  Fly  1648 QQVEKLAKKVQKLQNNIMKNDRDAKEITKEAGSVKLEAMRARGEANNLQSATSATNQTLTDRASR 1712
            .|:::...:|:||:...::|.|.|.|..:.|.....:|:    ||.....|.......|..|..:
 Frog  1019 DQIQQFTAQVEKLREKTVENQRLASEAHQAAQGANGKAL----EAQQGLDAMKTKYALLKSRLGQ 1079

  Fly  1713 SEN---ARERAKQLLQRASKLTVDTNAKLKDLNDLQTVYLNKNQQLLRLQAEIGPLNKELNEHLI 1774
            |.|   ..|:...:...|.:|..::...:..:..::|......:.||...:::..|.:|......
 Frog  1080 SSNLGAQGEKIANIKMEADRLIQESIQMMNKMKVIETELQEGRETLLMKFSQLEGLEEEAKLIRD 1144

  Fly  1775 HIKERGSHYRQC 1786
            :|.||...|..|
 Frog  1145 NISERALFYATC 1156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB1NP_476618.1 Laminin_N 63..286 CDD:278484 85/234 (36%)
EGF_Lam 287..343 CDD:238012 28/55 (51%)
Laminin_EGF 355..415 CDD:278482 32/59 (54%)
Laminin_EGF 418..475 CDD:278482 28/56 (50%)
EGF_Lam 477..526 CDD:238012 6/48 (13%)
EGF_Lam 529..567 CDD:214543 0/37 (0%)
EGF_Lam 789..834 CDD:214543 0/44 (0%)
Laminin_EGF 837..885 CDD:278482 0/47 (0%)
Laminin_EGF 883..930 CDD:278482 0/46 (0%)
Laminin_EGF 933..988 CDD:278482 0/54 (0%)
Laminin_EGF 991..1043 CDD:278482 0/51 (0%)
Laminin_EGF 1043..1091 CDD:278482 24/47 (51%)
Laminin_EGF 1094..1142 CDD:278482 20/47 (43%)
Laminin_EGF 1142..1190 CDD:278482 20/47 (43%)
COG6 1212..>1398 CDD:303003 40/192 (21%)
TelA 1439..1782 CDD:226371 70/345 (20%)
ApoLp-III_like 1545..1702 CDD:304399 37/156 (24%)
lamb3XP_012826649.2 Laminin_N 26..244 CDD:395009 91/242 (38%)
EGF_Lam 245..302 CDD:238012 29/57 (51%)
EGF_Lam 311..369 CDD:238012 32/57 (56%)
Laminin_EGF 375..424 CDD:395007 28/56 (50%)
Laminin_EGF 427..474 CDD:395007 34/612 (6%)
Laminin_EGF 477..525 CDD:395007 20/47 (43%)
EGF_Lam 525..569 CDD:214543 19/43 (44%)
Smc <815..1149 CDD:224117 65/337 (19%)
cc_LAMB_C 1087..1157 CDD:424069 13/70 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10574
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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