DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment r2d2 and prkra

DIOPT Version :10

Sequence 1:NP_609152.1 Gene:r2d2 / 34066 FlyBaseID:FBgn0031951 Length:311 Species:Drosophila melanogaster
Sequence 2:XP_005172565.1 Gene:prkra / 557370 ZFINID:ZDB-GENE-050309-206 Length:289 Species:Danio rerio


Alignment Length:208 Identity:52/208 - (25%)
Similarity:90/208 - (43%) Gaps:27/208 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 NKSAVSALQEFCARTQINLPTYSFIPGEDG-----GYVCKVELLEIEALGNGRSKRDAKHLAASN 62
            :|:.:..|.|:..:.. :.|.|..|.. ||     .::..|.:.|:...|.|.:|:.|||.||..
Zfish    15 DKTPIQLLHEYGIKIS-SAPKYELIHA-DGDAHQPSFMFSVTIGEVTCKGRGSTKKAAKHEAAEA 77

  Fly    63 ILRKIQLLPGIHGLMKDSTVGD------LDEELTNLNRDMVKELRDYCVRREMPLPCIEVVQQSG 121
            .|:.         |.:||.:.|      |..|....: :.|..|::..::|...||...|..::|
Zfish    78 ALKL---------LKRDSQIIDQRDNNGLSPEAGEAS-NPVGILQELAMQRVWCLPEYVVFMETG 132

  Fly   122 TPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALISSNSDNLRPDQMQVASTSKLKVVDM 186
            .....||...|.:..:...|....||.||:.||..|:|.:.|.|.:   .::..:..|::.|..:
Zfish   133 PGHMKEFTIACRLEGLEETGSGSSKKLARRAAAENMIAKLQSLSGS---SEITWSPPSRVYVESL 194

  Fly   187 EESM-EELEALRR 198
            ..|. |::..|:|
Zfish   195 RNSTGEKVSLLKR 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
r2d2NP_609152.1 DSRM 6..68 CDD:214634 18/66 (27%)
DSRM_SF 102..158 CDD:380679 15/55 (27%)
prkraXP_005172565.1 DSRM_PRKRA-like_rpt1 16..>66 CDD:380691 12/51 (24%)
DSRM_PRKRA-like_rpt2 106..172 CDD:380692 19/65 (29%)
DSRM_SF 215..286 CDD:444671
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.