DRSC/TRiP Functional Genomics Resources

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Protein Alignment r2d2 and stau2

DIOPT Version :10

Sequence 1:NP_609152.1 Gene:r2d2 / 34066 FlyBaseID:FBgn0031951 Length:311 Species:Drosophila melanogaster
Sequence 2:XP_021325790.1 Gene:stau2 / 393899 ZFINID:ZDB-GENE-040426-687 Length:684 Species:Danio rerio


Alignment Length:342 Identity:73/342 - (21%)
Similarity:129/342 - (37%) Gaps:76/342 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 NKSAVSALQEFCARTQINLPTYSFIPGEDG-----GYVCKVELLEIEALGNGRSKRDAKHLAASN 62
            :||.:|.:.|...:.  |||....:..|.|     .::.:|.:.|..|.|.|.||:.:|..||.:
Zfish   277 SKSEISLVYEIALKR--NLPVNFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKRAALS 339

  Fly    63 ILRKIQLL--------PGIHGLMKDSTVGDLDEELTNLNRDMVKELRDYCVRREMPLPCIEVVQQ 119
            ||::::.|        |.:|...:..|:.....|. ....:.:..|......::...|...::.:
Zfish   340 ILQELKKLPVLPVVEKPKVHYKKRPKTILKTGPEY-GQGMNPISRLAQIQQAKKEKEPEYMLLSE 403

  Fly   120 SGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLALI---SSNSDNLRPDQM-------- 173
            .|.|...||:....|.:.|..|....||.|::.||..||..:   :|......|::|        
Zfish   404 RGMPRRREFIMQVKVGTEVTTGTGPNKKVAKRNAAEAMLLQLGYKASTPLQNTPEKMDNKGWNGQ 468

  Fly   174 -----QVASTSKLKVVDMEESM-EELEALRRK-------KFTTYWELKE--AG-----SVDHTGM 218
                 :..|.::..::.:...: :|:||.|.|       .|.|..|:.:  ||     ||.:|. 
Zfish   469 RAAFPETTSNTQKGILHLSPDVYQEMEASRNKGVPGAPGNFPTAKEIGQGSAGPFCTPSVGNTA- 532

  Fly   219 RLCDRHNYFKNFYPTLKKEAIEAINSDEYESSKDKAMDVMSSLKITPKISEVESSSLVPLLSVEL 283
                          |:.||.:.:..|...|           :|.:..|...:...|:.|...:|.
Zfish   533 --------------TIAKELLLSGTSPTAE-----------ALVLKGKAPALACGSIQPSQQLEY 572

  Fly   284 NC---AFDVVLMAKETD 297
            ..   .|.|....::||
Zfish   573 LAHIQGFQVQYSDRQTD 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
r2d2NP_609152.1 DSRM 6..68 CDD:214634 19/66 (29%)
DSRM_SF 102..158 CDD:380679 13/55 (24%)
stau2XP_021325790.1 DSRM_STAU2_rpt1 75..142 CDD:380709
DSRM_STAU2_rpt2 170..251 CDD:380711
DSRM_STAU2_rpt3 278..344 CDD:380713 21/67 (31%)
DSRM_STAU2_rpt4 376..461 CDD:380715 18/84 (21%)
Staufen_C 526..631 CDD:465131 17/90 (19%)
Blue background indicates that the domain is not in the aligned region.

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