DRSC/TRiP Functional Genomics Resources

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Protein Alignment r2d2 and Tarbp2

DIOPT Version :10

Sequence 1:NP_609152.1 Gene:r2d2 / 34066 FlyBaseID:FBgn0031951 Length:311 Species:Drosophila melanogaster
Sequence 2:NP_001030113.1 Gene:Tarbp2 / 363006 RGDID:1307375 Length:365 Species:Rattus norvegicus


Alignment Length:279 Identity:61/279 - (21%)
Similarity:100/279 - (35%) Gaps:74/279 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KSAVSALQEFCARTQINLPTYSFIPGE----DGGYVCKVELLEIEALGNGRSKRDAKHLAASNIL 64
            |:.:|.|||:..|.. ..|.|..:..|    ...:..:|.:.:....|.|.||:.|||.||...|
  Rat    29 KTPISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVAL 92

  Fly    65 RKIQ----LLPGIHG----LMKDSTVGD------------LDEELTNLNRDM------------- 96
            :.::    |.|.:..    .:.||:|.:            :...|...:..|             
  Rat    93 KHLKGGSMLEPALEDSSSFSLLDSSVPEDTAVIAAEAAAPVPSALLTRSPPMEMQPPVSPQQSEC 157

  Fly    97 --VKELRDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEML- 158
              |..|::..|::...||...|.|:||.....||...|.|...:..|....||.|::.||.:|| 
  Rat   158 NPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLL 222

  Fly   159 -----ALISSNSDNLRP--DQMQVASTSKLKVVDMEESMEELEALRRKKFTTYWE-LKEA----- 210
                 .|.:.:.:...|  |...:..:|:            |:.||.:.....|: |:.:     
  Rat   223 RVHTVPLDARDGNEAEPDDDHFSIGVSSR------------LDGLRNRGPGCTWDSLRNSVGEKI 275

  Fly   211 --------GSVDHTGMRLC 221
                    ||:...|...|
  Rat   276 LSLRNCSVGSLGSLGSACC 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
r2d2NP_609152.1 DSRM 6..68 CDD:214634 19/65 (29%)
DSRM_SF 102..158 CDD:380679 17/55 (31%)
Tarbp2NP_001030113.1 Sufficient for interaction with PRKRA. /evidence=ECO:0000255|HAMAP-Rule:MF_03034 22..105 22/76 (29%)
DSRM_TARBP2_rpt1 27..98 CDD:380719 20/69 (29%)
Sufficient for interaction with PRKRA. /evidence=ECO:0000255|HAMAP-Rule:MF_03034 151..233 22/81 (27%)
DSRM_TARBP2_rpt2 158..224 CDD:380681 21/65 (32%)
Sufficient for interaction with DICER1. /evidence=ECO:0000255|HAMAP-Rule:MF_03034 227..365 13/80 (16%)
Sufficient for interaction with PRKRA. /evidence=ECO:0000255|HAMAP-Rule:MF_03034 286..365 2/9 (22%)
DSRM_TARBP2_rpt3 291..362 CDD:380722 1/4 (25%)

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