DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment r2d2 and Stau1

DIOPT Version :10

Sequence 1:NP_609152.1 Gene:r2d2 / 34066 FlyBaseID:FBgn0031951 Length:311 Species:Drosophila melanogaster
Sequence 2:NP_001103376.1 Gene:Stau1 / 20853 MGIID:1338864 Length:495 Species:Mus musculus


Alignment Length:223 Identity:54/223 - (24%)
Similarity:94/223 - (42%) Gaps:40/223 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 TYSFIPGEDGG-------YVCKVE--LLEIEAL-------GNGRSKRDAKHLAASNILRKIQLLP 71
            |||:  |..||       |...|.  |.::|..       |.|:.:...||.|.:..||.:|..|
Mouse    14 TYSY--GMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGKGKMRPPVKHDAPARALRTLQSEP 76

  Fly    72 GIHGLMKDSTVGDLDEELTNLNRDMVKELRDYCVRREMPLP-----CIEVVQQSGTPSAPEFVAC 131
                |.:...|...:.|..|||:..:.::.:..::|.:|:.     ..:|.::||.|....||..
Mouse    77 ----LPERLEVNGREAEEENLNKSEISQVFEIALKRNLPVNFESFLLTQVARESGPPHMKNFVTR 137

  Fly   132 CSVASIVRYGKSDKKKDARQ---RAAIEMLALIS--SNSDNLRPD-QMQVASTSKLKVV-DMEES 189
            .||...|..|:...||.:::   ||.:|.|..:.  ...:.::|. :.:...|.||:.. |..:.
Mouse   138 VSVGEFVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQG 202

  Fly   190 ME------ELEALRRKKFTTYWELKEAG 211
            |.      :::..:::|...|..|.|.|
Mouse   203 MNPISRLAQIQQAKKEKEPEYMLLTERG 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
r2d2NP_609152.1 DSRM 6..68 CDD:214634 17/60 (28%)
DSRM_SF 102..158 CDD:380679 17/63 (27%)
Stau1NP_001103376.1 DSRM_SF 1..70 CDD:444671 15/57 (26%)
DSRM_SF 95..167 CDD:444671 17/71 (24%)
DSRM_STAU1_rpt4 194..279 CDD:380714 7/37 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 278..318
Staufen_C 366..475 CDD:465131
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.