DRSC/TRiP Functional Genomics Resources

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Protein Alignment r2d2 and stau-1

DIOPT Version :10

Sequence 1:NP_609152.1 Gene:r2d2 / 34066 FlyBaseID:FBgn0031951 Length:311 Species:Drosophila melanogaster
Sequence 2:NP_508196.1 Gene:stau-1 / 180455 WormBaseID:WBGene00018857 Length:705 Species:Caenorhabditis elegans


Alignment Length:384 Identity:75/384 - (19%)
Similarity:143/384 - (37%) Gaps:103/384 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KSAVSALQEFCARTQINLPTYSFI----PGEDGGYVCKV------ELLEIEALGNGRSKRDAKHL 58
            ||.:|.:.|...:.::|: .:..:    |..|..||.:.      .:::.||:|.|:.|:.|:..
 Worm   291 KSVISDIHEKAYQLKVNV-VFEVLKEEGPPHDRQYVVRCAFVTSGNVVKAEAVGKGKKKKSAQQE 354

  Fly    59 AASNILRKIQ-LLPGIHGLMKDSTVGDLDEELTNLNRD-----MVKELRDYCVRREMPL------ 111
            |.:.:|..:: |.|..:.:...:.|....::|..:||:     :||:      ::..||      
 Worm   355 ACTQLLATVEHLTPENNPVALATNVCKTQKKLAAMNREPKRKTIVKD------KKMDPLYGHQIN 413

  Fly   112 ----------------PCIEVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDARQRAAIEMLAL 160
                            |..|:|.:.|.....||:........|:.||...|:.|::.||..||..
 Worm   414 PVSRLIQVTQAKSKEHPTFELVAEHGVSKYKEFIIQVKYGDDVQEGKGPNKRLAKRAAAEAMLES 478

  Fly   161 ISSNSDNLRPDQMQVASTSKLKVVDMEESMEELEALRRKKFTTYW---------------ELKEA 210
            |..    ::|......|..| |::|.:.|:.|:         ::|               :..||
 Worm   479 IGF----VKPLPPPGKSLLK-KMIDCDPSLPEI---------SHWTGPPPTAVSVSTSEPDTSEA 529

  Fly   211 GSVDHTGMRLCDRHNYFKNFYPTLKKEAIEAINSDEY----ESSKDKAMDVMSSLK----ITPKI 267
            ..:......:.::    :...|..:|..: ..||..:    ...:|....::.|||    :..||
 Worm   530 AQLSPEQTDISEK----RELSPDTEKRRV-TFNSQVHACPPPGDQDYPNSIVQSLKKDAIVEGKI 589

  Fly   268 SEVESS-----SLVPLLSVELNCAFDVVLMAKETDI-----------YDHIIDYFRTML 310
            ..::.|     :|.....|||:......|..|.|.|           .:.:.|:|:..|
 Worm   590 RRLKRSKENRRALTAEQIVELSERAQSYLQTKNTTIQSSQSSSAHHHLEQLSDFFKFSL 648

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
r2d2NP_609152.1 DSRM 6..68 CDD:214634 15/71 (21%)
DSRM_SF 102..158 CDD:380679 15/77 (19%)
stau-1NP_508196.1 DSRM_STAU_rpt1 78..141 CDD:380686
DSRM 294..364 CDD:214634 15/70 (21%)
DSRM_STAU_rpt4 413..480 CDD:380689 15/66 (23%)
DSRM_STAU_rpt5 633..700 CDD:380690 3/16 (19%)
Blue background indicates that the domain is not in the aligned region.

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