DRSC/TRiP Functional Genomics Resources

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Protein Alignment LKRSDH and SPBC3B8.03

DIOPT Version :9

Sequence 1:NP_001285719.1 Gene:LKRSDH / 34064 FlyBaseID:FBgn0286198 Length:928 Species:Drosophila melanogaster
Sequence 2:NP_596411.1 Gene:SPBC3B8.03 / 2540908 PomBaseID:SPBC3B8.03 Length:450 Species:Schizosaccharomyces pombe


Alignment Length:450 Identity:162/450 - (36%)
Similarity:252/450 - (56%) Gaps:22/450 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   486 VLVLGAGMVSAPLVEWLHREKDVSITVCSQVKEEADRLAQQYAGVDSVYLDVNESTGHLQELCGR 550
            :|:||:|.|:.|.:|:|.|.|:.:|||..:...:|:..........::.||||:... |::....
pombe     4 ILLLGSGFVAHPTLEYLSRRKENNITVACRTLSKAEAFINGIPNSKAIALDVNDEAA-LEKAVSE 67

  Fly   551 ADVVVSLLPYSLHGMVARYCVAEGTHMVTASYLNDEISGLHEEAKAKGVTIMNEVGLDPGIDHLL 615
            .|:.:||:||:.|..|.:..:..|.|:.|.||:|.:::.|.|.|...|...|||:|:|||||||.
pombe    68 HDLTISLIPYTYHATVMKAAIKHGKHVCTTSYVNPKMAELEEAAIKAGSICMNEIGVDPGIDHLY 132

  Fly   616 ALECIHEVQDKGAVVESFVSYCGGLPAPEHSNNALRYKFSWSPRGVLLNTLSAAKYLSQGQIVEI 680
            |::.|.||...|..::||:||||||||||.|||.|.||||||.|||||...::||:...|::|||
pombe   133 AIKTIEEVHKAGGKIKSFLSYCGGLPAPEDSNNPLGYKFSWSSRGVLLALRNSAKFYENGKLVEI 197

  Fly   681 SGGGELMSSPRSLDFLPGFALEGFPNRDSTKYGNLYGLGRDVHTLLRGTIRYKGFSESIKPMQLL 745
            . |.:||.:.:.....||:|...:||||||.|...|.: .:..|::|||:||:||.|.|..:..:
pombe   198 D-GKDLMETAKPYFIYPGYAFVCYPNRDSTVYQERYQI-PEAETIIRGTLRYQGFPEFIHCLVDM 260

  Fly   746 GLIDPEPHALLHPSGPDVTWRQLVIHLMGMSDSTIFYENLKQKLTERIGDV-------------D 797
            |.:|......|.|..|.:.|:::...::....|:      :..|.::|..:             :
pombe   261 GFLDETAQEYLSPEAPALPWKEVTARVIKAESSS------EADLIKKISSIHKFKDEDDKKRILN 319

  Fly   798 GIESLGLLDDTPVVKLNTPLDTLSHYLSKRLAFERDERDLVVLRHEVGIRWPDGRREERGINFVV 862
            |::.||:....||.....|||||...|.:.:.:|..|||:::|:|:..:...:|:|:.|....:.
pombe   320 GLKWLGMFSSKPVTPRGNPLDTLCATLEELMQYEEGERDMLILQHKFEVETKEGKRQTRTCTLLD 384

  Fly   863 YGQPQGHSAMAMTVGKPAAIAAKMILDGEIQERGVLLPFTPDIYRPMLQRLRSEGLTATE 922
            ||.|.|:::||..||.|..:|.:.||||.|...|||.|....:..|::..|..||:...|
pombe   385 YGVPNGYTSMAKLVGVPCGVATQQILDGVINTPGVLAPNDMKLCGPLIDTLAKEGIRLEE 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LKRSDHNP_001285719.1 PLN02819 23..922 CDD:215439 161/448 (36%)
LKR_SDH_like 23..465 CDD:240665
Sacchrp_dh_NADP 486..602 CDD:281434 36/115 (31%)
Sacchrp_dh_C 606..917 CDD:293259 120/323 (37%)
SPBC3B8.03NP_596411.1 Lys9 1..396 CDD:224662 143/400 (36%)
Sacchrp_dh_NADP 4..119 CDD:281434 36/115 (31%)
Sacchrp_dh_C 123..439 CDD:293259 120/323 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 229 1.000 Domainoid score I512
eggNOG 1 0.900 - - E1_COG1748
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H4212
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004455
OrthoInspector 1 1.000 - - oto100641
orthoMCL 1 0.900 - - OOG6_101775
Panther 1 1.100 - - LDO PTHR11133
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3527
SonicParanoid 1 1.000 - - X3157
TreeFam 00.000 Not matched by this tool.
109.840

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