DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13796 and Slc6a1

DIOPT Version :9

Sequence 1:NP_001137807.1 Gene:CG13796 / 34051 FlyBaseID:FBgn0031939 Length:641 Species:Drosophila melanogaster
Sequence 2:NP_077347.1 Gene:Slc6a1 / 79212 RGDID:620533 Length:599 Species:Rattus norvegicus


Alignment Length:572 Identity:156/572 - (27%)
Similarity:249/572 - (43%) Gaps:85/572 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 RGRWAKSADFYFASCTHAFSSLIFSELSTFGILHG--GWLLFIIAYLMGMLFYSLPIFLIQAFLG 146
            |..|....||..:...:|..   ...:..|..|.|  |...|:|.|.:.::|..:|:||::..||
  Rat    44 RDTWKGRFDFLMSCVGYAIG---LGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLG 105

  Fly   147 QFSSSGTISAFRVAPIFKGIGYAILLLNLGTLTYYSIAAVVPLIYTVNSIHPVIPWMSCNNSWNT 211
            |::|.|.:..:::||:|||:|.|..:|:.....||.:.....:.|..||....:||..|:|.|||
  Rat   106 QYTSIGGLGVWKLAPMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNT 170

  Fly   212 QECSLHENYDVDDYRVDPHSTVEFF-RSMIASTAKGSTSMSISWSMLIGVLSIWLVVLALLLKPV 275
            ..|  ..||.:.:......:.|||: |:|...|........|.|.:.|.:...|::|...:.|.|
  Rat   171 DRC--FSNYSLVNTTNMTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWVLVYFCIWKGV 233

  Fly   276 AFIGKVLRCSCVLMFGFFVAVFLYLLIHEQVTF----DTLHYYWMPQLD--SFDSILATARTALL 334
            .:.|||:..|....:     :.|.:|....||.    :.:.:|..|...  |...:...|.|.:.
  Rat   234 GWTGKVVYFSATYPY-----IMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIF 293

  Fly   335 MAGGALGPGWGSIITLSSYNNFRRDAERLSIWV-CLTHITIGLMGLLCCNVAHDHFEDHVGMMPL 398
            .   :.|.|.||:|.|.|||:|..:..|.||.| |:...|....|.:..::        ||.| .
  Rat   294 F---SYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSI--------VGFM-A 346

  Fly   399 HVDEKHHMQ-------FLYLCFSYLFGRFTTTPNLWAFLFFGMIFLSELCALIIQMMSVITALFD 456
            ||.::....       ..:|.:.....:...:| |||.|||.|:.:..:.:....:...||||.|
  Rat   347 HVTKRSIADVAASGPGLAFLAYPEAVTQLPISP-LWAILFFSMLLMLGIDSQFCTVEGFITALVD 410

  Fly   457 EF-ETLRSRRILVISSLVFCLTASSVYFCTQLGFSQLTQ--LPNLAVFTHLLISGILVLM----- 513
            |: ..||:||.|.|:::  |:.:   |.   :|.|.:||  :....:|.:...||:.:|.     
  Rat   411 EYPRLLRNRRELFIAAV--CIVS---YL---IGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFE 467

  Fly   514 ---TTWVYGRVRFQCDLQFMLGKTISSFKIFFIRFATPIFL-GLCLF---QLT------YLFTRD 565
               .:|.||..||..::|.|:|.....:......|.|||.: |:.||   |:|      |:|.: 
  Rat   468 CVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFLFSAVQMTPLTMGSYVFPK- 531

  Fly   566 RIHDVLIYVSQGLILLTAIS-------YMVYKVCRTNGDWRQRLQQCLAPHD 610
                    ..||:..|.|:|       ||.|......|..:||||..:.|.:
  Rat   532 --------WGQGVGWLMALSSMVLIPGYMAYMFLTLKGSLKQRLQVMIQPSE 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13796NP_001137807.1 SLC5-6-like_sbd 123..610 CDD:294310 147/529 (28%)
Slc6a1NP_077347.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
SLC6sbd_GAT1 2..599 CDD:212075 156/572 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 577..599
PDZ-binding 597..599
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.920

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