DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13796 and slc6a4b

DIOPT Version :9

Sequence 1:NP_001137807.1 Gene:CG13796 / 34051 FlyBaseID:FBgn0031939 Length:641 Species:Drosophila melanogaster
Sequence 2:NP_001170930.1 Gene:slc6a4b / 664770 ZFINID:ZDB-GENE-060314-2 Length:591 Species:Danio rerio


Alignment Length:581 Identity:160/581 - (27%)
Similarity:256/581 - (44%) Gaps:101/581 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 RGRWAKSADFYFASCTHA--------FSSLIFSELSTFGILHGGWLLFIIAYLMGMLFYSLPIFL 140
            |.:|:|..||..:....|        |..:.:.        :||. .|:|.|::..:|..:|:|.
Zfish    38 RDKWSKKMDFLLSVIGFAVDLGNVWRFPYICYQ--------NGGG-AFLIPYVLMAVFGGVPLFY 93

  Fly   141 IQAFLGQFSSSGTISAFR-VAPIFKGIGYAILLLNLGTLTYYSIAAVVPLIYTVNSIHPVIPWMS 204
            ::..||||..:|.||.:: :.|||||||:||.::.|....||:......|.|..:|....:||.|
Zfish    94 MELALGQFHRTGAISIWKHICPIFKGIGFAICIIALYVSFYYNTIIAWALFYFYSSFSSTLPWTS 158

  Fly   205 CNNSWNTQECSLH---ENYDVDDYRVDPHSTVEFF-RSMIA---STAKGSTSMSISWSMLIGVLS 262
            |:|.|||:.|:.:   :|....:|...|  ..||: |:::|   |:..|:... |.|.:::.:..
Zfish   159 CDNDWNTENCTNYFGKDNVTWTNYSRSP--AEEFYTRNVLAVHESSGLGNVGY-IRWQLMLCLFL 220

  Fly   263 IWLVVLALLLKPVAFIGKVLRCSCVLMFGFFVAVFLYLLIHEQV---TFDTLHYYWMPQLDSF-- 322
            |:.:|...|.|.|...|||:..:..|.:    .|.|.|:|....   .:..:.:|..|:.:..  
Zfish   221 IFTIVYFSLWKGVKTSGKVVWVTATLPY----VVLLILMIRGATLPGAWKGVVFYLNPKWEKLKE 281

  Fly   323 DSILATARTALLMAGGALGPGWGSIITLSSYNNFR----RDAERLSIWVCLTHITIG-----LMG 378
            .|:...|...:..   :||||:|.::.|||||.|.    |||...|:..|||....|     ::|
Zfish   282 TSVWVDAAAQIFF---SLGPGFGVLLALSSYNPFTNNCYRDAIVTSLVNCLTSFVSGFVIFTVLG 343

  Fly   379 LLCCNVAHDHFEDHVGMMPLHVDEKHHMQFLYLCFSYLFGRFTTTP----NLWAFLFFGMIFLSE 439
            .:.       .:.:|.:..:..|:...:.|:            |.|    |:....||.:||...
Zfish   344 YMA-------EQRNVNVEDVARDKGPSLLFI------------TYPEAIANMVGSTFFAIIFFVM 389

  Fly   440 LCALIIQ-----MMSVITALFDEF-ETLRSRRILVISSLVFCLTASSVYFCTQLGFSQLTQLPNL 498
            :..|.:.     :.::|||:.||: :.|..||.|.:..||......|:...|:.|...:..|...
Zfish   390 MITLGLDSTFGGLEAIITAVMDEYPDVLSHRRELFVLGLVVVCFLGSLSTLTKGGAYVVKLLEEF 454

  Fly   499 AVFTHLLISGILVLMTT---WVYGRVRFQCDLQFMLGKTISSF-KIFFIRFATPIFLG------- 552
            .|.:.::  .|:.|..|   |.||..||..|::.|||.|...| |:.::.. :|.||.       
Zfish   455 GVGSSII--AIVFLEATAVSWFYGINRFSNDIKSMLGYTPGLFWKVCWVAI-SPAFLAYIIISSL 516

  Fly   553 -----LCLFQLTYLFTRDRIHDVLIYVSQGLILLTAISYMVYKVCRTNGDWRQRLQQCLAP 608
                 |.||.  |.|....|....|..:...|.:..  |||||:..|.|..:|||..||.|
Zfish   517 LNPQTLTLFD--YEFPDWSITVGYIIGASSFIWIPI--YMVYKLVWTPGSLKQRLAVCLRP 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13796NP_001137807.1 SLC5-6-like_sbd 123..610 CDD:294310 151/534 (28%)
slc6a4bNP_001170930.1 SLC6sbd_SERT 38..574 CDD:271399 160/581 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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