DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13796 and snf-9

DIOPT Version :9

Sequence 1:NP_001137807.1 Gene:CG13796 / 34051 FlyBaseID:FBgn0031939 Length:641 Species:Drosophila melanogaster
Sequence 2:NP_503077.2 Gene:snf-9 / 178512 WormBaseID:WBGene00004908 Length:713 Species:Caenorhabditis elegans


Alignment Length:617 Identity:140/617 - (22%)
Similarity:230/617 - (37%) Gaps:182/617 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 RQVHSMAVRTGSAYDTLERPYRHDKCRGRWAKSADFYFASCTHAFSSLIFSELSTFGILHG---- 118
            :::.:..||...:...:|.. :.|.|||.|....:|.               |||.|:..|    
 Worm    26 QRIATTIVRDSGSSKEIEES-QADPCRGAWGNQIEFL---------------LSTLGMAVGLGNI 74

  Fly   119 ----------GWLLFIIAYLMGMLFYSLPIFLIQAFLGQF-SSSGTISAFRVAPIFKGIGYAILL 172
                      |...|::.|:...|.:.||...::..|||: .::..|...|.|||.:|:|:..:.
 Worm    75 WRFPTRAYNNGGSAFLVPYVACALLFGLPAVYLEFLLGQYHRTTAPIIFRRFAPILQGVGWMAVA 139

  Fly   173 LNLGTLTYYSIAAVVPLIYTVNSI--HPVIPWMSCNNSWNTQE----------C----------- 214
            ::.....||.|......:|..:.:  | ...|..|.||||..|          |           
 Worm   140 VSSLVAIYYIIIIGWSTVYMASIVMGH-TSKWNRCGNSWNNAESCVDSGLQPLCASFNATGNETS 203

  Fly   215 --------------------SLHENYDVDDYRVDPHSTVE--FFRSMIASTAKGSTSMSISWSML 257
                                |.::..|::..:....:..|  ||..::..|.......||::...
 Worm   204 PVWANLSSEGRGKFYIYLNTSCYDKVDLEFNKTKMIAATEQYFFDYVVKPTDGFLEFSSINFKSF 268

  Fly   258 IGVLSIWLVVLALLLKPVAFIGKVLRCSCVLMFGFFVAVFLYLLIHEQVTF----DTLHYY---- 314
            .|:.:.||:|:.:|.|.|.::||.  ...::...:|:.:   ||....:|.    |.::||    
 Worm   269 FGMNACWLIVVLILWKGVGYMGKA--SYVIVTLPYFIII---LLFFRGITLDGAEDGIYYYLGNP 328

  Fly   315 -W----MPQLDSFDSILATARTALLMAGGALGPGWGSIITLSSY----NNFRRDAERLSIWVCLT 370
             |    ||         ||...||.....:||.|:|.:|.::|:    ||..|||..:.|...:.
 Worm   329 DWSKVFMP---------ATWGEALKQLCFSLGIGYGGLIGMASFSKPNNNCFRDALIVIIGDTMM 384

  Fly   371 HITIG-----LMGLLC----CNVA---HDHFE-------DHVGMMPLHVDEKHHMQFLYLCFSYL 416
            .:..|     .:|.|.    |:||   :|.|.       :.:|.|||                  
 Worm   385 SLVGGAAVFSTLGFLAKKKGCSVAEVVNDGFSLAFVAFPEALGRMPL------------------ 431

  Fly   417 FGRFTTTPNLWAFLFFGMIFLSELCALIIQMMSVITALFDEFETLRSRRILVISSLVFCLT--AS 479
                   |.||:||||.|:|...:...:..:....:::.|:|..||.|:.||  ::::||.  ..
 Worm   432 -------PELWSFLFFLMLFFLGISTEVAYVNVFCSSICDQFVNLRKRKWLV--AVLWCLVLYVL 487

  Fly   480 SVYFCTQLGFSQLTQLPNLAVFTHLLISGIL--------VLMTTWVYGRVRFQCDLQFMLGKT-- 534
            .|...|..||.........|       :|:.        ||:..:||||.....|::.|.|::  
 Worm   488 GVVMVTDGGFYWFIMFDEYA-------AGVSSCCAVTAEVLIVAYVYGRRNQLADMKEMFGESKN 545

  Fly   535 -----ISSFKIFF---IRFATPIFLGLCLFQL 558
                 |.....:|   ..|.||: ||..|..|
 Worm   546 KCTSWIGQHSPYFGFNWMFVTPV-LGSILIVL 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13796NP_001137807.1 SLC5-6-like_sbd 123..610 CDD:294310 125/538 (23%)
snf-9NP_503077.2 SLC6sbd 52..577 CDD:271359 134/590 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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