DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13796 and snf-2

DIOPT Version :9

Sequence 1:NP_001137807.1 Gene:CG13796 / 34051 FlyBaseID:FBgn0031939 Length:641 Species:Drosophila melanogaster
Sequence 2:NP_492396.2 Gene:snf-2 / 172701 WormBaseID:WBGene00004901 Length:746 Species:Caenorhabditis elegans


Alignment Length:531 Identity:119/531 - (22%)
Similarity:203/531 - (38%) Gaps:118/531 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 GWLLFIIAYLMGMLFYSLPIFLIQAFLGQFSSSGTISAF-RVAPIFKGIGYAILLLNLGTLTYYS 182
            |...|:|.|::....:::|...::..|||:::....:.| |:.|..:|:|:...::......||.
 Worm   142 GGTSFLIVYIICAFVFAVPAIHMEFALGQYAAKSPPAVFRRIMPALEGVGWMTCIVGAVIGVYYM 206

  Fly   183 IAAVVPLIYTVNSIHPVIPWMSCNNSWNTQEC-----------SLHEN----------------- 219
            |.....::|.:| |..|.....|:|.||...|           .|:.|                 
 Worm   207 ILISWIVLYIIN-IFYVNNMGRCDNPWNQNNCYDGSEQSRCNKGLYSNMTANASSFLNTTMAPLM 270

  Fly   220 --------------YDVDDYRVDPHSTVEFFRSMIASTAKGSTSM-SISWSMLIGVLSIWLVVLA 269
                          .|..:..|:. .|.:||...:...:.|.|.. ||:..:|..|...|::...
 Worm   271 SSGSKRILYINGKCQDATNMSVEV-GTEQFFSKSVIRPSAGFTDFNSINLPILGAVALCWVIAAV 334

  Fly   270 LLLKPVAFIGKVLRCSCVLMFGFFVAVFLYLLIHEQVTFDTLHYYWMPQLDSFDSIL--ATARTA 332
            :|::.:..|||:...:.:|.: |.:...|...:......|.| |:...|.| |:.:.  .|...|
 Worm   335 VLIRGMKAIGKLSYVTVILPY-FIIVSLLICGVSLPGAKDGL-YHLFGQTD-FNYLYKRETWTAA 396

  Fly   333 LLMAGGALGPGWGSIITLSSYN----NFRRDAERLSIWVCLTHI--------TIGLM----GLLC 381
            |.....:|..|.|.::.::|||    |:.||...:.....|..|        |:|.:    |:..
 Worm   397 LQQICFSLSIGQGGLMNIASYNKKTYNWYRDVYIIVFLDTLMSILGGITVFSTLGFLAYERGINS 461

  Fly   382 CNVAHDHFEDHVGMMPLHVDEKHHMQFLYLCFSYLFGRFT------TTPNLWAFLFFGMIFLSEL 440
            .::  |.| :|:      |.|.|.:.|:.         :|      ..|.||..|||.|:||..:
 Worm   462 TDI--DAF-NHI------VKEGHALAFIV---------YTEAIAEMPVPYLWYALFFIMLFLLGI 508

  Fly   441 CALIIQMMSVITALFDEFETLRSRRILVISSLVFCLTASSVYF------CTQLGFSQLTQLPNLA 499
            ...::.:..|.:.|.|.|..||.||.|.:      |:.|:|:|      .|..||.........:
 Worm   509 STEVVIVEIVCSCLADRFRYLRERRWLTV------LSVSAVFFLLGLVMTTDAGFYWFDMFDEYS 567

  Fly   500 VFTHLLISGILVLMTT-WVYGRVRFQCDLQFMLGKTIS----------SFKIFFIRFATPI---- 549
            ..........::.||. |.||...|:.|:..|.|:..|          .|.....:|.||:    
 Worm   568 TGISATFGTAIMCMTVFWCYGTNHFREDIAVMWGEPESWLATCLGPAAYFWTLIWKFVTPVCSLL 632

  Fly   550 FLGLCLFQLTY 560
            .:||.:::..|
 Worm   633 MMGLWIWEKKY 643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13796NP_001137807.1 SLC5-6-like_sbd 123..610 CDD:294310 118/527 (22%)
snf-2NP_492396.2 SLC6sbd 113..638 CDD:271359 118/524 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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