DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13796 and slc6a4

DIOPT Version :9

Sequence 1:NP_001137807.1 Gene:CG13796 / 34051 FlyBaseID:FBgn0031939 Length:641 Species:Drosophila melanogaster
Sequence 2:XP_017946918.1 Gene:slc6a4 / 100493853 XenbaseID:XB-GENE-22062972 Length:664 Species:Xenopus tropicalis


Alignment Length:676 Identity:168/676 - (24%)
Similarity:280/676 - (41%) Gaps:132/676 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 GEQLNNC---MLLGDCENSEHGTELPGDFIGEP---------VET--------ESGGGMGGSLAL 50
            |:.|.||   :.|.:..|..|.:  ||: .|||         |::        .:||..|.:..|
 Frog    32 GQLLRNCKPSLRLSEELNKVHPS--PGE-RGEPGHISNKYLAVQSPEAPCNGMRNGGDEGSTPTL 93

  Fly    51 AARRIRSRQVHSMAVRTGSAYDTLERPYRHDKCRGRWAKSADFYFASCTHA--------FSSLIF 107
            ........::..:....|.              |..|:|..||..:...:|        |..:.:
 Frog    94 TVLPACRAEIQHLQTEIGE--------------RETWSKKIDFLLSVIGYAVDLGNVWRFPYVCY 144

  Fly   108 SELSTFGILHGGWLLFIIAYLMGMLFYSLPIFLIQAFLGQFSSSGTISAFR-VAPIFKGIGYAIL 171
            .        :||. .|:|.|::..:|..:|:|.::..:||:..:|.||.:| :.|:||||||||.
 Frog   145 Q--------NGGG-AFLIPYVIMAVFGGIPLFYMELAMGQYHRNGCISIWRKICPLFKGIGYAIC 200

  Fly   172 LLNLGTLTYYSIAAVVPLIYTVNSIHPVIPWMSCNNSWNTQECSLH-ENYDV--DDYRVDPHSTV 233
            ::.|....||:......|.|.:.|....:||.||.|.|||..|:.: :|..|  .:..:.|  ..
 Frog   201 MIALYVAFYYNTIMAWALYYLIFSFRSELPWTSCLNEWNTGNCTNYFQNSSVGWSNSSISP--AE 263

  Fly   234 EFFRSMIAS--TAKGSTSM-SISWSMLIGVLSIWLVVLALLLKPVAFIGKVLRCSCVLMFGFFVA 295
            ||:..::..  .:||...: .|||.:.:.:|.|:.||...:.|.|...|||     |.:...|..
 Frog   264 EFYTRLVLQIHKSKGLHDLGGISWQLTLCLLLIFTVVYFSIWKGVKTSGKV-----VWVTATFPY 323

  Fly   296 VFLYLLIHEQVT----FDTLHYYWMPQLDSFDSILATA--RTALLMAGGALGPGWGSIITLSSYN 354
            :.|.||:....|    :..:.:|..|   .::.:|.||  ..|......:||||:|.::..:|||
 Frog   324 IVLALLLIRGATLPGAWRGVLFYLQP---DWEKLLTTAVWVDAAAQIFFSLGPGFGVLLAFASYN 385

  Fly   355 NFR----RDAERLSIWVCLTHITIGL-----MGLLCCNVAHDHFEDHVGMMPLHVDE---KHHMQ 407
            .|.    :||...|...|:|....||     :|.:            ..|..|.|.|   .....
 Frog   386 KFHNNCYQDALITSTVNCMTSFMSGLVIFTVLGYM------------AEMRNLDVSEVAKDTGPS 438

  Fly   408 FLYLCFSYLFGRFTTTPNLWAFLFFGMIFLSELCALIIQMMSVITALFDEFETLRSRR----ILV 468
            .|::.::........: ..:|.:||.|:....|.:....:..||||:.|||..:..:|    :.:
 Frog   439 LLFITYAEAIANMPAS-TFFAIIFFLMLITLGLDSTFAGLEGVITAVLDEFPHIWGKRRELFVFL 502

  Fly   469 ISSLVFCLTASSVYFCTQLGFSQLTQL-----PNLAVFTHLLISGILVLMTTWVYGRVRFQCDLQ 528
            :.|:.|....|::.|    |.:.:.:|     ...||.|.:.:..|.|   :|.||..:|..|::
 Frog   503 LISVCFLGALSTLTF----GGAYMVKLFEEYATGPAVLTVVFLEAIAV---SWFYGINQFCRDVR 560

  Fly   529 FMLGKTISSF-KIFFIRFATPIFL--GLCLFQ--------LTYLFTRDRIHDVLIYVSQGLILLT 582
            .|||.:...| ||.::... |:||  .:|.|.        ..|.:....:  ||.|.......:.
 Frog   561 EMLGFSPGWFWKICWVAIC-PLFLLFIICSFMSSPPDLRLFNYQYPSWTV--VLGYCIGTSSFIC 622

  Fly   583 AISYMVYKVCRTNGDWRQRLQQCLAP 608
            ..:||||.:..|.|..::|..:.:.|
 Frog   623 VPAYMVYLLTSTPGSIKERFLKSITP 648

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13796NP_001137807.1 SLC5-6-like_sbd 123..610 CDD:294310 141/531 (27%)
slc6a4XP_017946918.1 5HT_transport_N 48..91 CDD:367522 11/45 (24%)
SLC5-6-like_sbd 113..649 CDD:382020 150/578 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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