DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13793 and Slc6a1

DIOPT Version :9

Sequence 1:NP_609136.2 Gene:CG13793 / 34047 FlyBaseID:FBgn0031935 Length:583 Species:Drosophila melanogaster
Sequence 2:NP_077347.1 Gene:Slc6a1 / 79212 RGDID:620533 Length:599 Species:Rattus norvegicus


Alignment Length:599 Identity:150/599 - (25%)
Similarity:264/599 - (44%) Gaps:101/599 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PDLNRGNWEKPTDYIFACFGLALKLDIFVASFWFF-----FNTGIFGMVPYLMYMVIYLVPIMVI 67
            ||  |..|:...|::.:|.|.|:.|    .:.|.|     .|.|...::||.:.::...||:.::
  Rat    42 PD--RDTWKGRFDFLMSCVGYAIGL----GNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLL 100

  Fly    68 HSYMGQFSSSGFISAFRLSPLFKGMGYVSLFLTITLLIYYTIFAAVPLLFVLNSFRPTLPW-SCE 131
            ...:||::|.|.:..::|:|:|||:|..:..|:..|.|||.:..:..:.::.|||..|||| .|:
  Rat   101 ECSLGQYTSIGGLGVWKLAPMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCD 165

  Fly   132 GFKSWQND-TIAKWSICNATIAEEVAKETENDTYFYITNIHVPSVLYFKSHFESFQNDSELNDYE 195
              ..|..| ..:.:|:.|.|.......|      |:..|:|.             ..|......:
  Rat   166 --NPWNTDRCFSNYSLVNTTNMTSAVVE------FWERNMHQ-------------MTDGLDKPGQ 209

  Fly   196 ISWHLSGLFALVWATIAFIFYKFSEPAKFGKCIRYMVIGTVALLLVCFVRFLFLPGAHLGLKNYM 260
            |.|.|:...|:.|..:.|..:|  .....||.:.:.......:|::.|.|.:.||||..|:..|:
  Rat   210 IRWPLAITLAIAWVLVYFCIWK--GVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYI 272

  Fly   261 TPSIEEFVVGTSSTFIMALQ----AFGAGWGSVITLSSFNGFKTNIMSYSWII----SFGQIFI- 316
            ||:..:  :..|..::.|..    ::|.|.||:|.|.|:|.|..|:...|.|:    |...:|. 
  Rat   273 TPNFRK--LSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAG 335

  Fly   317 YIMFGMVSFMLEHYFLGLPKPLFETQVINHWVLFLSSASALSSLGWPNLWTFIYYTMLLMAALIV 381
            :::|.:|.|| .|.   ..:.:.:.......:.||:...|::.|....||..::::||||   :.
  Rat   336 FVIFSIVGFM-AHV---TKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLM---LG 393

  Fly   382 ITTQIFTI---LQSLFDEFEQLRAKKQEVTLGLIGGLAVCSLYF------CTNHGVLYFAILSID 437
            |.:|..|:   :.:|.||:.:|...::|:.:.     |||.:.:      .|..|:..|.:....
  Rat   394 IDSQFCTVEGFITALVDEYPRLLRNRRELFIA-----AVCIVSYLIGLSNITQGGIYVFKLFDYY 453

  Fly   438 AIFSQTLLHLLLL--LVVLWVYGRDRFQKDIKFMLG-QPFASWKVFILRFVAPPTLV--ICLVLE 497
            :....:||.|:..  :.:.|.||.:||..:|:.|:| :|...||:....|.  |.:|  :.|...
  Rat   454 SASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFT--PIIVAGVFLFSA 516

  Fly   498 IKMC-LEEHSY-----SSSVLHFMAIILVGLPILAIPAYGFYYIHQRPGSISELFRATDWYPVEM 556
            ::|. |...||     ...|...||:    ..::.||.|..|......||:              
  Rat   517 VQMTPLTMGSYVFPKWGQGVGWLMAL----SSMVLIPGYMAYMFLTLKGSL-------------- 563

  Fly   557 EYRQQYGELVQKSE 570
              :|:...::|.||
  Rat   564 --KQRLQVMIQPSE 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13793NP_609136.2 SLC5-6-like_sbd 19..498 CDD:271356 129/508 (25%)
Slc6a1NP_077347.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
SLC6sbd_GAT1 2..599 CDD:212075 150/599 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 577..599
PDZ-binding 597..599
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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